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Novobiocin

HCID 54675769
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Grundinformationen

CAS
303-81-1
Standard-SMILES
CO[C@@H]1[C@@H](OC(N)=O)[C@@H](O)[C@H](Oc2ccc3c(O)c(NC(=O)c4ccc(O)c(CC=C(C)C)c4)c(=O)oc3c2C)OC1(C)C
InChIKey
YJQPYGGHQPGBLI-KGSXXDOSSA-N
Summenformel
C31H36N2O11
Durchschnittliche Molmasse
612,6 g/mol
Monoisotopische Masse
612,23190997

Überblick

Novobiocin is a coumarin-derived antibiotic obtained from Streptomyces niveus. It has a role as an antimicrobial agent, an antibacterial agent, an EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor, a hepatoprotective agent and an Escherichia coli metabolite. It is a carbamate ester, an ether, a monocarboxylic acid amide, a member of phenols, a hexoside, a hydroxycoumarin and a monosaccharide derivative. It is a conjugate acid of a novobiocin(1-).

Namen und Bezeichner

Bevorzugter Name
Novobiocin
IUPAC
[(3R,4S,5R,6R)-5-hydroxy-6-[4-hydroxy-3-[[4-hydroxy-3-(3-methylbut-2-enyl)benzoyl]amino]-8-methyl-2-oxochromen-7-yl]oxy-3-methoxy-2,2-dimethyloxan-4-yl] carbamate
Lokaler Name
Novobiocin
Englischer Name
Novobiocin
Summenformel
C31H36N2O11
Molmasse
612.62

Namen und Synonyme

novobiocin303-81-1StreptonivicinCardelmycinInamycinSpheromycinNovobiocinaNovobiocineCrystallinic acidNovobiocinumCathocinPA 93
Weitere Namen anzeigen
pa93novo-rU 6391C05080albamixrobiocinacathomycin
17EC19951NDTXSID3041083Benzamide, N-(7-((3-O-(aminocarbonyl)-6-deoxy-5-C-methyl-4-O-methyl-beta-L-lyxo-hexopyranosyl)oxy)-4-hydroxy-8-methyl-2-oxo-2H-1-benzopyran-3-yl)-4-hydroxy-3-(3-methyl-2-butenyl)-CHEBI:28368[(3R,4S,5R,6R)-5-hydroxy-6-[4-hydroxy-3-[[4-hydroxy-3-(3-methylbut-2-enyl)benzoyl]amino]-8-methyl-2-oxochromen-7-yl]oxy-3-methoxy-2,2-dimethyloxan-4-yl] carbamateN-{7-[(3-O-carbamoyl-6-deoxy-5-methyl-4-O-methyl-beta-D-gulopyranosyl)oxy]-4-hydroxy-8-methyl-2-oxo-2H-chromen-3-yl}-4-hydroxy-3-(3-methylbut-2-en-1-yl)benzamideNSC2382((3R,4S,5R,6R)-5-hydroxy-6-(4-hydroxy-3-((4-hydroxy-3-(3-methylbut-2-enyl)benzoyl)amino)-8-methyl-2-oxochromen-7-yl)oxy-3-methoxy-2,2-dimethyloxan-4-yl) carbamate

Datenbank-Bezeichner

CAS
303-81-1
PubChem CID

Eigenschaften

Berechnete Struktureigenschaften

XLogP
3,3
Polarare Oberfläche (TPSA)
196 Ų
H-Brücken-Donoren
5
H-Brücken-Akzeptoren
11
Frei drehbare Bindungen
9
Schwere Atome
44
Formalladung
0
Komplexität
1.150

Experimentelle und physikochemische Eigenschaften

Drugs · 2 Einträge

Pharmaceuticals -> Listed in ZINC15

Pharmaceuticals -> Antibiotics

LogP · 2 Einträge

4.1

1.33

Density1.3448 g/cu cm
Color/FormPale yellow orthorhombic crystals from ethanol
Solubility · 3 Einträge

Insoluble

Sol in aq soln above pH 7.5. Practically insol in more acidic solns. Sol in acetone, ethyl acetate, amyl acetate, lower alcohols, pyridine.

9.66e-03 g/L

Animal Drugs · 2 Einträge

FDA approved animal drugs -> Active ingredient

Pharmaceuticals -> Animal Drugs -> Approved in Taiwan

Melting Point152-156 °C (decomposes)
Optical RotationSpecific optical rotation at 24 °C for D (sodium) line = -63.0 deg (c = 1 in ethanol)
Physical Description

Sicherheit und Regulatorisches

Sicherheitsangaben dienen nur zur Orientierung und ersetzen weder das Sicherheitsdatenblatt (SDB) des Lieferanten noch geltende Vorschriften oder eine fachliche Bewertung.

GHS-Klassifizierung

GHS Classification · 4 Einträge

Warning

H302 (100%): Harmful if swallowed [Warning Acute toxicity, oral]

P261, P264, P270, P272, P280, P301+P317, P302+P352, P321, P330, P333+P317, P362+P364, and P501 (click each P-code to see the statement)

Aggregated GHS information provided per 39 reports by companies from 1 notifications to the ECHA C&L Inventory. Each notification may be associated with multiple companies.

Gefahrenhinweise

Other Safety InformationIMAP assessments - Benzamide, N-[7-[[3-O-(aminocarbonyl)-6-deoxy-5-C-methyl-4-O-methyl-.alpha.-L-lyxo-hexopyranosyl]oxy]-4-hydroxy-8-methyl-2-oxo-2H-1-benzopyran-3-yl]-4-hydroxy-3-(3-methyl-2-butenyl)-: Human health tier I assessment
FDA Requirements · 5 Einträge

The Approved Drug Products with Therapeutic Equivalence Evaluations List identifies currently marketed discontinued drug products for human use, incl novobiocin sodium, approved on the basis of safety and effectiveness by FDA under sections 505 of the Federal Food, Drug, and Cosmetic Act. /Novobiocin sodium/

Intramammary dosage form. Novobiocin oil suspension. ... Indications for use: It is used in dry cows for the treatment of mastitis caused by susceptible strains of Staphylococcus aureus and Streptococcus agalactiae. ... Indications for use: Use in lactating cows for treatment of mastitis caused by susceptible strains of Staphylococcus aureus.

Tolerances for residues of novobiocin are established at 0.1 part per million in milk from dairy animals and 1 part per million in the uncooked edible tissues of cattle, chickens, turkeys, and ducks

New animal drugs for use in animal feeds. Requirement of a medicated feed mill license. Novobiocin is included on this list.

For more FDA Requirements (Complete) data for NOVOBIOCIN (6 total), please visit the HSDB record page.

Hazard Classes and Categories

Chemie und Industrie

Pharmakologische Informationen

ATC CodeQJ - Antiinfectives for systemic use
Protein Binding95%
Pharmacodynamics · 1 Eintrag

Novobiocin is an aminocoumarin antibiotic that was produced by the actinomycete <i>Streptomyces niveus</i>. Novobiocin binds to DNA gyrase, and blocks adenosine triphosphatase (ATPase) activity. Other antibiotics in the aminocoumarin class include coumermycin A1 and clorobiocin.

Mechanism of Action · 1 Eintrag

Novobiocin is an aminocoumarinthat works by inhibiting the GyrB subunit of the bacterial DNA gyrase enzyme involved in energy tranduction. Similar to other aminocoumarin antibiotics, it acts as a competitive inhibitor of the ATPase reaction catalysed by GyrB.

Biological Half-Life · 2 Einträge

6 hours

Novobiocin was given p.o. for 96 hr; 750 mg/sq m of i.v. cyclophosphamide was administered at 48 hr. Thirty-four patients received 65 courses. ... 18 of 19 patients treated at greater than or equal to 4 g daily had serum levels greater than or equal to 100 ug/ml at steady state, a level which corresponds to levels used in vitro and seen in vivo where the murine novobiocin half-life of 82 min is far less than that seen in humans (6.0 hr).

MeSH Pharmacological Classification · 3 Einträge

Compounds or agents that combine with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.

Compounds that inhibit cell production of DNA or RNA.

Substances that inhibit the growth or reproduction of BACTERIA.

Absorption, Distribution and Excretion · 2 Einträge

Oral bioavailability is negligible.

Patients with refractory cancer were treated with VP-16 on days 1, 3, and 5 /in a Phase 1 Clinical Trial/. Antiemetics, consisting of ondansetron and dexamethasone, were given 60 minutes before the VP-16 was administered. Novobiocin was given orally 30 minutes before the VP-16, and the dose was escalated in successive groups of patients according to a standard dose escalation design. Treatment cycles were repeated every 4 weeks. Plasma concentrations of novobiocin were determined during the first treatment cycle by high-performance liquid chromatography. Thirty-three patients were treated for a total of 69 cycles. Eleven patients were treated with a starting dose of VP-16 of 120 mg/sq m, and three of these patients experienced neutropenic fever. The dose of VP-16 was reduced to 100 mg/m2, and an additional 22 patients were enrolled. The dose of novobiocin ranged from 3 to 9 g. At a novobiocin dose of at least 5.5 g, plasma concentrations of at least 150 uM were sustained for 24 hours.

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Weitere Aktionen
Neue NotizNeue ReaktionAnfrage stellen
54675769
DTXSID
DTXSID3041083
ChEMBL
CHEMBL36506
ChEBI
CHEBI:28368
UNII
17EC19951N
EC Number
206-146-3
Nikkaji
J743.343C
Solid
Dissociation Constants · 2 Einträge

4.3

pKa1 = 4.3 (coumarin hydroxyl)

Collision Cross Section262.83 Ų [M+H]+ [CCS Type: TW; Method: calibrated with polyalanine and drug standards]
Other Experimental Properties · 1 Eintrag

Mol wt: 634.60. Minute crystals, dec 220 °C. Specific optical rotation at 24 °C for D (sodium) line = -38 deg (c = 2.5 in 95% ethanol); Specific optical rotation at 24 °C for D (sodium) line = -33 deg (c = 2.5 in water). Freely sol in water. A 100 mg/ml soln has a pH of 7.5 and a half-life of about 30 days at 25 °C and several months at 4 °C /Monosodium salt/

Physikochemische Eigenschaften

Schmelzpunkt
170 · 170-172 °C
Siedepunkt
657.29 °C · 657.29°C (rough estimate)
Dichte
1.3448 · 1.3448
Brechungsindex
1.58 · 1.5800 (estimate)
storage temp.
-20 °C · Hygroscopic, -20°C Freezer, Under inert atmosphere
Löslichkeit
DMSO (Slightly), Methanol (Slightly)
Aggregatzustand
Solid
pka
1 · pKa1 4.3; pKa2 9.1(at 25℃)
Farbe
White to Pale Yellow
Acute Tox. 4 (100%)

Sicherheit und Schutzausrüstung

Disposal Methods · 1 Eintrag

SRP: At the time of review, criteria for land treatment or burial (sanitary landfill) disposal practices are subject to significant revision. Prior to implementing land disposal of waste residue (including waste sludge), consult with environmental regulatory agencies for guidance on acceptable disposal practices.

Allowable TolerancesTolerances for residues of novobiocin are established at 0.1 part per million in milk from dairy animals and 1 part per million in the uncooked edible tissues of cattle, chickens, turkeys, and ducks

Toxikologische Informationen

Human Toxicity Excerpts · 2 Einträge

/SIGNS AND SYMPTOMS/ Patients with refractory cancer were treated with VP-16 on days 1, 3, and 5 /in a Phase 1 Clinical Trial/. Antiemetics, consisting of ondansetron and dexamethasone, were given 60 minutes before the VP-16 was administered. Novobiocin was given orally 30 minutes before the VP-16, and the dose was escalated in successive groups of patients according to a standard dose escalation design. Treatment cycles were repeated every 4 weeks. Plasma concentrations of novobiocin were determined during the first treatment cycle by high-performance liquid chromatography. Thirty-three patients were treated for a total of 69 cycles. Eleven patients were treated with a starting dose of VP-16 of 120 mg/m2, and three of these patients experienced neutropenic fever. The dose of VP-16 was reduced to 100 mg/sq m, and an additional 22 patients were enrolled. The dose of novobiocin ranged from 3 to 9 g. At a novobiocin dose of at least 5.5 g, plasma concentrations of at least 150 uM were sustained for 24 hours. Dose-limiting toxicities consisted of neutropenic fever and reversible hyperbilirubinemia. Nausea, which was a limiting toxicity in other trials of novobiocin, was well controlled with the use of serotonergic antiemetics. Diarrhea was common but mild in most patients. In previously treated patients, the recommended dose of novobiocin in this schedule is 7 g/sq m/day. Novobiocin does not appear to augment the toxicity of VP-16 to the bone marrow or the gastrointestinal mucosa. Plasma concentrations of novobiocin equivalent to the levels required to modulate VP-16 in vitro are readily achievable for total but not unbound free drug.

/SIGNS AND SYMPTOMS/ Antineoplastic drug resistance is a major obstacle to improved treatment of most adult cancers in humans. Novobiocin, an antibacterial agent which inhibits the eukaryotic topoisomerase II enzyme, increases the cytotoxicity of several alkylating agents in vitro by the formation of lethal DNA-DNA interstrand cross-links, perhaps by decreasing the repair of drug monoadducts. In murine tumors treated in vivo novobiocin markedly potentiates alkylating agent cytotoxicity without concomitant increases in host toxicity. With this background, a Phase I trial of novobiocin and cyclophosphamide was performed in refractory cancer patients. Novobiocin was given p.o. for 96 h; 750 mg/m2 of i.v. cyclophosphamide was administered at 48 hr. Thirty-four patients received 65 courses. The dose-limiting toxicity of novobiocin in this trial was vomiting. The maximum tolerated dose was 6 g/day. Six of 34 patients had Grade III or IV mylosuppression but no dose escalation effect was noted. Three patients developed allergic reactions which resolved completely. No other significant toxicity occurred. While no dose-dependent effect on serum novobiocin levels occurred, 18 of 19 patients treated at greater than or equal to 4 g daily had serum levels greater than or equal to 100 ug/ml at steady state, a level which corresponds to levels used in vitro and seen in vivo where the murine novobiocin half-life of 82 min is far less than that seen in humans (6.0 hr). Two of 30 evaluable patients had partial responses. Four other patients had stable disease. Four of six had prior disease progression on cyclophosphamide combination therapy. Novobiocin is well tolerated in patients receiving cyclophosphamide and blood levels are in the drug-potentiating range. Phase II trials in cyclophosphamide refractory patients are anticipated.

Drug Induced Liver Injury · 4 Einträge

Drug-Induced Liver Injury Severity and Toxicity (DILIst)

novobiocin

DILI Positive

DOI:10.1016/j.drudis.2019.09.022

Non-Human Toxicity Excerpts · 1 Eintrag

/GENOTOXICITY/ The antimicrobial agents nalidixic acid and novobiocin, both inhibitors of DNA gyrase, preferentially inhibit the growth of DNA repair-deficient Escherichia coli, Salmonella typhimurium and Bacillus subtilis. On the other hand, these agents exhibit no demonstrable mutagenicity for S. typhimurium and E. coli even when tested under conditions designed to take the metabolic properties of these agents into consideration.

Regulatorische Informationen

FDA Requirements · 5 Einträge

The Approved Drug Products with Therapeutic Equivalence Evaluations List identifies currently marketed discontinued drug products for human use, incl novobiocin sodium, approved on the basis of safety and effectiveness by FDA under sections 505 of the Federal Food, Drug, and Cosmetic Act. /Novobiocin sodium/

Intramammary dosage form. Novobiocin oil suspension. ... Indications for use: It is used in dry cows for the treatment of mastitis caused by susceptible strains of Staphylococcus aureus and Streptococcus agalactiae. ... Indications for use: Use in lactating cows for treatment of mastitis caused by susceptible strains of Staphylococcus aureus.

Tolerances for residues of novobiocin are established at 0.1 part per million in milk from dairy animals and 1 part per million in the uncooked edible tissues of cattle, chickens, turkeys, and ducks

New animal drugs for use in animal feeds. Requirement of a medicated feed mill license. Novobiocin is included on this list.

For more FDA Requirements (Complete) data for NOVOBIOCIN (6 total), please visit the HSDB record page.

Sicherheitsdaten

wgk
3
hs_code
2941906000
Giftige Stoffe Daten
303-81-1(Hazardous Substances Data)
Cellular LocationsCytoplasm

Verwendung und Herstellung

Uses · 4 Einträge

Mesh Heading: anti-bacterial agents, enzyme inhibitors

MEDICATION (VET)

Medicinal feed additive for chicken and turkey

Novobiocin is a narrow-spectrum antibiotic that may be bacteriostatic or bactericidal at higher concentrations. It is active mostly against gram-positive bacteria but also against a few gram-negative bacteria. ... Its main use is in combination with other agents for the treatment of bovine mastitis.

Methods of Manufacturing · 2 Einträge

Antibiotic substance produced by Streptomyces spheroides ... US patent 3,000,873 (1961 to Merck and Co.) ... US patents 3,049,475, 3,049,476, 3,049,534 (1962 to Merck and Co.). ... Synthesis ... US patents 2,925,411 (1960); 2,966,484 (1960 to Merck and Co.).

/Produced/ by Streptomyces niveus; US patent 3068221 (1962 to Upjohn). ... Conversion of isonovobiocin to novobiocin: US patent 2983723 (1961 to Upjohn).

Use Classification · 2 Einträge

Veterinary Drug -> ANTIMICROBIAL_AGENT -> JECFA Functional Classes

Pharmaceuticals -> Animal Drugs -> Approved in Taiwan

Anwendungen · 1 Eintrag

VerwendenNovobiocin is an aminocoumarin antibiotic isolated from a number of species of Streptomyces. Novobiocin exhibits broad spectrum Gram positive activity and was used clinically. Novobiocin is a potent inhibitor of bacterial DNA gyrase and a competitive inhibitor of the ATPase reaction catalysed by GyrB.

Vor- und nachgelagerte Produkte

Vorgelagerte Rohstoffe

SojabohnenmehlGlucose

Ergänzende Hinweise

DefinitionChEBI: A coumarin-derived antibiotic obtained from Streptomyces niveus.