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Clofazimine

HCID 2794
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Basic information

CAS
2030-63-9
Standard SMILES
CC(C)N=c1cc2n(-c3ccc(Cl)cc3)c3ccccc3nc-2cc1Nc1ccc(Cl)cc1
InChIKey
WDQPAMHFFCXSNU-UHFFFAOYSA-N
Molecular formula
C27H22Cl2N4
Average molar mass
473.4 g/mol
Monoisotopic mass
472.1221521

Overview

Clofazimine is 3-Isopropylimino-3,5-dihydro-phenazine in which the hydrogen at position 5 is substituted substituted by a 4-chlorophenyl group, and that at position 2 is substituted by a (4-chlorophenyl)amino group. A dark red crystalline solid, clofazimine is an antimycobacterial and is one of the main drugs used for the treatment of multi-bacillary leprosy. However, it can cause red/brown discolouration of the skin, so other treatments are often preferred in light-skinned patients. It has a role as a non-steroidal anti-inflammatory drug, a leprostatic drug and a dye. It is a member of phenazines and a member of monochlorobenzenes.

Names & identifiers

Preferred name
Clofazimine
IUPAC
N,5-bis(4-chlorophenyl)-3-propan-2-yliminophenazin-2-amine
English name
Clofazimine
Molecular formula
C27H22Cl2N4
Molecular weight
473.4

Names & synonyms

clofazimine2030-63-9LampreneChlofazimineClofaziminaClofaziminumNSC-141046N,5-bis(4-chlorophenyl)-3-propan-2-yliminophenazin-2-amineG 30320ColfazimineDTXSID70228393-(p-Chloranilino)-10-(p-chlorphenyl)-2,10-dihydro-2-(isopropylimino)-phenazin
Show more names
CFZ3-(p-chloranilino)-10-(p-chlorphenyl)-2,10-dihydro-2-(isopropylimino)-phenaz4-chloro-N-(5-(4-chlorophenyl)-3,5-dihydro-3-isopropyliminophenazin-2-yl)anilineb-663lampren
G-303203-(p-Chloranilino)-10-(p-chlorophenyl)-2,10-dihydro-2-(isopropylimino)-phenazineD959AE5USF2-Phenazinamine, 3,5-dihydro-N,5-bis(4-chlorophenyl)-3-((1-methylethyl)imino)-Phenazine, 3-(p-chloroanilino)-10-(p-chlorophenyl)-2,10-dihydro-2-(isopropylimino)-NSC141046g30320B663

Database identifiers

CAS
2030-63-9
PubChem CID
2794
DTXSID
DTXSID7022839

Properties

Computed structural properties

XLogP
7.1
Topological polar surface area
40 Ų
Hydrogen bond donors
1
Hydrogen bond acceptors
4
Rotatable bonds
4
Heavy atoms
33
Formal charge
0
Complexity
829

Experimental & physicochemical properties

Drugs · 2 items

Pharmaceuticals -> Listed in ZINC15

Pharmaceuticals -> Antibiotics

LogP7
Solubility · 2 items

1.51e-03 g/L

0.3 [ug/mL] (The mean of the results at pH 7.4)

Human Drugs · 4 items

Breast Feeding; Lactation; Milk, Human; Anti-Infective Agents; Leprostatic Agents

FDA approved drugs -> Active ingredient

FDA approved drugs -> Active ingredient

Antileprosy medicines

Melting Point · 2 items

210-212 °C

210 - 212 °C

Physical DescriptionSolid
Dissociation Constants8.51
Collision Cross Section · 2 items

216.35 Ų [M+H]+ [CCS Type: TW; Method: calibrated with polyalanine and drug standards]

216.8 Ų [M+H]+ [CCS Type: TW; Method: calibrated with polyalanine and drug standards]

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

GHS classification

GHS Classification · 4 items

Warning

H315 (50%): Causes skin irritation [Warning Skin corrosion/irritation]

P261, P264, P264+P265, P271, P273, P280, P302+P352, P304+P340, P305+P351+P338, P319, P321, P332+P317, P337+P317, P362+P364, P403+P233, P405, and P501 (click each P-code to see the statement)

Aggregated GHS information provided per 2 reports by companies from 2 notifications to the ECHA C&L Inventory. Each notification may be associated with multiple companies.

Hazard information

Other Safety InformationIMAP assessments - 2-Phenazinamine, N,5-bis(4-chlorophenyl)-3,5-dihydro-3-[(1-methylethyl)imino]-: Human health tier I assessment
Hazard Classes and CategoriesAquatic Chronic 4 (100%)

Toxicology

Hepatotoxicity · 1 item

Therapy with clofazimine has not been associated with elevations in serum enzymes during treatment and has not been linked to cases of clinically apparent liver injury. The multidrug therapy combination of clofazimine, rifampin and dapsone, however, is associated with instances of jaundice and hepatitis, which are most likely attributable to dapsone ("dapsone syndrome") and marked by fever, rash, eosinophilia and hepatic involvement (DRESS syndrome) typically arising within 8 weeks of starting the drug regimen. Dapsone induced liver injury can be severe and the mortality rate in cases with jaundice is as high as 25% to 33%. The liver injury usually resolves with stopping therapy and most patients have later tolerated restarting of clofazimine and rifampin. Thus, clinically apparent liver injury from clofazimine must be very rare, if it occurs at all.

Drug Induced Liver Injury

Chemistry & industry

Pharmacology

ATC Code · 3 items

J - Antiinfectives for systemic use

QJ - Antiinfectives for systemic use

J04BA01

Protein BindingClofazimine is bound primarily to beta-lipoproteins (and, to a lesser extent, alpha-lipoproteins) in the serum. This binding was saturable at concentrations of ~10 µg/mL. Binding to gamma-globulin and albumin is negligible.
Pharmacodynamics · 1 item

Clofazimine exerts a slow bactericidal effect on <i>Mycobacterium leprae</i> (Hansen's bacillus) due primarily to its action on the bacterial outer membrane, though there is some evidence that activity on the bacterial respiratory chain and ion transporters may play a role. It also exerts anti-inflammatory properties due to the suppression of T-lymphocyte activity. Clofazimine has a relatively long duration of action owing to its long residence time in the body, but is still administered daily. Approximately 75-100% of patients receiving clofazimine will experience an orange-pink to brownish-black discoloration of the skin, conjunctivae, and bodily fluids. Skin discoloration may take several months or years to reverse following the cessation of therapy. Clofazimine has also been implicated in abdominal obstruction, in some cases fatal, due to the deposition of drug and formation of crystals in the intestinal mucosa - complaints of abdominal pain and nausea/vomiting should be investigated promptly, and the doses of clofazimine should be lowered or discontinued if it is found to be the culprit. Its use should be avoided in patients with hepatic dysfunction.

Mechanism of Action · 1 item

Although the precise mechanism(s) of action of clofazimine have not been elucidated, its antimicrobial activity appears to be membrane-directed. It was previously thought that, due to its lipophilicity, clofazimine participated in the generation of intracellular reactive oxygen species (ROS) via redox cycling, specifically H<sub>2</sub>O<sub>2</sub> and superoxide, which then exerted an antimicrobial effect. A more recent and compelling theory involves clofazimine interacting with bacterial membrane phospholipids to generate antimicrobial lysophospholipids - bactericidal efficacy may, then, arise from the combined membrane-destabilizing effects of both clofazimine and lysophospholipids, which interfere with K+ uptake and, ultimately, ATP production. The anti-inflammatory activity of clofazimine is the result of its inhibition of T-lymphocyte activation and proliferation. Several mechanisms have been proposed, including direct antagonism of T-cell Kv 1.3 potassium channels and indirect action by promoting the release of E-series prostaglandins and reactive oxygen species from bystander neutrophils and monocytes.

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Compound notes

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On this pageBasic informationOverviewNames & identifiersPropertiesSafety & regulationChemistry & industryRelated reactionsCompound notes
ChEMBL
CHEMBL1083384、CHEMBL1292
ChEBI
CHEBI:3749
UNII
D959AE5USF
EC Number
217-980-2
Nikkaji
J9.543E

Physicochemical properties

Melting point
210 · 210-212°
Boiling point
616.26 °C · 616.26°C (rough estimate)
Density
1.1342 · 1.1342 (rough estimate)
refractive index
1.63 · 1.6300 (estimate)
storage temp.
2 · 2-8°C
solubility
Practically insoluble in water, soluble in methylene chloride, very slightly soluble in ethanol (96 per cent). It shows polymorphism (5.9).
pka
8.37 · 8.37; also reported as 8.51(at 25℃)
form
Solid
color
Yellow to Amber to Dark red
Water Solubility
10 mg/L · 10mg/L(temperature not stated)
Merck
14 · 14,2373
BCS Class
4 · 4/3
Major Application
pharmaceutical (small molecule)
InChI
InChI=1S/C27H22Cl2N4/c1-17(2)30-24-16-27-25(15-23(24)31-20-11-7-18(28)8-12-20)32-22-5-3-4-6-26(22)33(27)21-13-9-19(29)10-14-21/h3-17,31H,1-2H3
InChIKey
WDQPAMHFFCXSNU-UHFFFAOYSA-N
SMILES
C1C2C(N(C3=CC=C(Cl)C=C3)C3=C(N=2)C=CC=C3)=CC(=NC(C)C)C=1NC1=CC=C(Cl)C=C1
FDA UNII
959 AE5USF · D959AE5USF
ATC code
4 BA01 · J04BA01
UNSPSC Code
41116107 · 41116107
NACRES
24 · NA.24
Protein binding
Low
Excreted unchanged in urine
1 % · <1%
Volume of distribution
High
Biological half-life
10 · 10-70 days / Unchanged
Symbol(GHS)
7 · GHS07
Signal word
Warning
Hazard statements
315 · H315-H335-H319-H413
Precautionary statements
264 · P264-P280-P302+P352-P321-P332+P313-P362-P264-P280-P305+P351+P338-P337+P313P
Hazard Codes
Xn,Xi
Risk Statements
22 · 22-36/37/38
Safety Statements
36 · 36-26
WGK Germany
3 · 3
RTECS
1578000 · SG1578000
HS Code
35040000 · 35040000
Storage Class
11 · 11 - Combustible Solids
Toxicity
50 orally · LD50 orally in mice, rats, and guinea pigs: >4 g/kg (Stenger)
· 4 items

Drug-Induced Liver Injury Severity and Toxicity (DILIst)

Clofazimine

DILI Positive

DOI:10.1016/j.drudis.2019.09.022

Effects During Pregnancy and Lactation◉ Summary of Use during Lactation

Safety data

wgk
3
rtecs
SG1578000
hs_code
35040000
Toxicity
LD50 orally in mice, rats, and guinea pigs: >4 g/kg (Stenger)
risk_code
22-36/37/38
Signal word
Warning
Symbol(GHS)
GHS07
hazard_code
Xn,Xi
safety_code
36-26
Storage Class
11 - Combustible Solids
Hazard statements
H315-H335-H319-H413
Precautionary statements
P264-P280-P302+P352-P321-P332+P313-P362-P264-P280-P305+P351+P338-P337+P313P
Biological Half-LifeThe mean elimination half-life is approximately 25 days.
Metabolism/Metabolites · 1 item

Three metabolites have been identified in the urine following repeated oral doses of clofazimine. It is unclear whether these metabolites are pharmacologically active. Metabolite I may be the result of the hydrolytic dehalogenation of clofazimine and metabolite II presumably is formed by a hydrolytic deamination reaction followed by glucuronidation.

FDA Pharmacological Classification · 4 items

D959AE5USF

CLOFAZIMINE

Established Pharmacologic Class [EPC] - Antimycobacterial

Clofazimine is an Antimycobacterial.

MeSH Pharmacological Classification · 2 items

Substances that reduce or suppress INFLAMMATION.

Substances that suppress Mycobacterium leprae, ameliorate the clinical manifestations of leprosy, and/or reduce the incidence and severity of leprous reactions.

Absorption, Distribution and Excretion · 3 items

Absorption varies from 45 to 62% following oral administration in leprosy patients. Co-administration of a 200mg dose of clofazimine with food resulted in a Cmax of 0.41 mg/L with a Tmax of 8 h; administered in a fasting state, the corresponding Cmax was 30% lower while the time to Cmax was 12 h.

Part of an ingested dose of clofazimine is found in the feces, which may represent excretion in the bile, and a small amount is also eliminated in the sputum, sebum, and sweat. Excretion of unchanged drug and metabolites in a 24-hour urine collection was negligible.

Clofazimine is highly lipophilic and therefore deposits primarily in fatty tissues and cells of the reticuloendothelial system, where it is taken up by macrophages and further distributed throughout the body. Crystalized deposits have been found in the mesenteric lymph nodes, adrenals, subcutaneous fat, liver, bile, gall bladder, spleen, small intestine, muscles, bones, and skin.

Cellular LocationsCytoplasm

Applications

Usesantiinflammatory, glucocorticoid

UsesAntibacterial (tuberculostatic, leprostatic).

Upstream & downstream products

Upstream raw materials

2-Amino-4-chlorodiphenylamine
Additional notes · 1 item

DefinitionChEBI: 3-Isopropylimino-3,5-dihydro-phenazine in which the hydrogen at position 5 is substituted substituted by a 4-chlorophenyl group, and that at position 2 is substituted by a (4-chlorophenyl)amino group. A dark red crystalline solid, clofazimine is an antimyc bacterial and is one of the main drugs used for the treatment of multi-bacillary leprosy. However, it can cause red/brown discolouration of the skin, so other treatments are often preferred in light-skinned patients.