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1-(2'-Deoxyribosyl)-2-pyrimidinone

HCID 3082201
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Basic information

CAS
22003-30-1
Standard SMILES
O=c1ncccn1[C@@H]1C[C@H](O)[C@@H](CO)O1
InChIKey
QEJOIGZDWKFVCO-RNJXMRFFSA-N
Molecular formula
C9H12N2O4
Average molar mass
212.2 g/mol
Monoisotopic mass
212.07970687

Overview

structure given in first source

Names & identifiers

Preferred name
1-(2'-Deoxyribosyl)-2-pyrimidinone
IUPAC
1-[(2S,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
English name
1-(2'-deoxyribosyl)-2-pyrimidinone
Molecular formula
C9H12N2O4
Molecular weight
212.2

Names & synonyms

1-(2'-Deoxyribosyl)-2-pyrimidinone1-DrpoDTXSID70176443RefChem:73939DTXCID409893422003-30-1alpha-2'-Deoxy Zebularine68780-64-31-[(2S,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one1-(beta-D-Deoxyribofuranosyl)-2-pyrimidinone2(1H)-Pyrimidinone, 1-(2-deoxy-beta-D-erythro-pentofuranosyl)-beta-2-Deoxy Zebularine
Show more names
β-2’-Deoxy Zebularine(2-aminoethyl)[4-(3,4-dichlorophenoxy)butyl]amine2(1H)-Pyrimidinone, 1-(2-deoxy-β-D-erythro-pentofuranosyl)-1-(2-Deoxy-β-D-erythro -pentofuranosyl)-2(1H ) -pyrimidinone
SCHEMBL87172671-(2-Deoxy-a-D-erythro-pentofuranosyl)-2(1H)-pyrimidinone1-(2-Deoxy-alpha-D-erythro-pentofuranosyl)pyrimidin-2(1H)-one

Database identifiers

CAS
22003-30-1
PubChem CID
3082201
DTXSID
DTXSID70176443
Nikkaji
J3.382.056I

Properties

Computed structural properties

XLogP
-1.2
Topological polar surface area
82.4 Ų
Hydrogen bond donors
2
Hydrogen bond acceptors
4
Rotatable bonds
2
Heavy atoms
15
Formal charge
0
Complexity
315

Physicochemical properties

Melting point
138 · 138-140 °C
Boiling point
450.2 · 450.2±55.0 °C(Predicted)
Density
1.57 · 1.57±0.1 g/cm3(Predicted)
pka
14.03 · 14.03±0.60(Predicted)

Chemistry & industry

Applications

Usesβ-2’-Deoxy Zebularine is a metabolite of Zebularine (Z276000) and can be used as an inhibitor of human deoxycytidylate deaminase.

Related reactions

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Compound notes

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