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N-(1-(3,4-Dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)benzamide

HCID 315922
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Basic information

CAS
13089-48-0
Standard SMILES
O=C(Nc1ccn(C2OC(CO)C(O)C2O)c(=O)n1)c1ccccc1
InChIKey
BNXBRFDWSPXODM-UHFFFAOYSA-N
Molecular formula
C16H17N3O6
Average molar mass
347.32 g/mol
Monoisotopic mass
347.11173527

Names & identifiers

Preferred name
N-(1-(3,4-Dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)benzamide
IUPAC
N-[1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]benzamide
English name
N4-Benzoylcytidine
Molecular formula
C16H17N3O6
Molecular weight
347.32

Names & synonyms

N-(1-(3,4-Dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)benzamideN4-Benzoyl-L-cytidineN-{1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxohydropyrimidin-4-yl}ben zamiden4-benzoyl-d-cytidine1018812-31-1NSC242979TimTec1_004198SCHEMBL18852530HMS1545O18N-[1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-2-oxo-pyrimidin-4-yl]benzamideN4-Benzoylcytidine;N-(1-(3,4-Dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)benzamideAKOS002813440
Show more names
N4-Bz-CrN-(1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)benzamideBz-rCrC(Bz)N4-Bz-rCN4<NSC 242979N6-BenzoylBenzoylcytidine
AKOS016161214AC-5744NB01918NSC-242979N-[1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]benzamideN-[1-[3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-2-oxo-pyrimidin-4-yl]benzamideAS-10351ST056917

Properties

Computed structural properties

XLogP
0.3
Topological polar surface area
132 Ų
Hydrogen bond donors
4
Hydrogen bond acceptors
6
Rotatable bonds
4
Heavy atoms
25
Formal charge
0
Complexity
586

Experimental & physicochemical properties

LogP0.3

Physicochemical properties

Melting point
230 · 230-234 °C (dec.)(lit.)
Density
1.59 · 1.59±0.1 g/cm3(Predicted)
refractive index
46 ° · 46 ° (C=1, DMSO)
storage temp.
2 · 2-8°C
solubility
1 N · Soluble in 1N NaOH at 10mg/ml. Also soluble in methanol or DMSO
pka
8.61 · 8.61±0.20(Predicted)
form
Crystalline Powder
color
White to Off-white
optical activity
27 · [α]27/D +55°, c = 0.1 in methanol
InChI
1S/C16H17N3O6/c20-8-10-12(21)13(22)15(25-10)19-7-6-11(18-16(19)24)17-14(23)9-4-2-1-3-5-9/h1-7,10,12-13,15,20-22H,8H2,(H,17,18,23,24)/t10-,12-,13-,15-/m1/s1
InChIKey
BNXBRFDWSPXODM-BPGGGUHBSA-N
SMILES
OC[C@H]1O[C@@H](N2C=CC(NC(=O)C3=CC=CC=C3)=NC2=O)[C@H](O)[C@@H]1O

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

Safety data

PPE
Eyeshields, Gloves, type N95 (US)
wgk
3
hs_code
29349990
Signal word
Warning
Symbol(GHS)
GHS07
safety_code
24/25
Storage Class
11 - Combustible Solids
Hazard statements
H315-H319-H335
REACH Registrations
Active
Precautionary statements
P280-P302+P352-P362+P364

Chemistry & industry

Applications

UsesN-Benzoylcytidine is a useful building block for oligoribonucleotide synthesis.

UsesN4-Benzoylcytidine is a useful building block for oligoribonucleotide synthesis

Upstream & downstream products

Upstream raw materials

CytidineBenzoic anhydrideBenzoyl chloride

Related reactions

2 records
New reaction record
HRID 677678 reaction equation
HRID 677678As reactantTraining data from https://doi.org/10.1039/C8SC04228D (3/10)
HRID 808887 reaction equation
HRID 808887As productTest data from https://doi.org/10.1039/C8SC04228D

Compound notes

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Database identifiers

CAS
13089-48-0
PubChem CID
315922
CAS DataBase Reference
13089 · 13089-48-0(CAS DataBase Reference)
UNSPSC Code
12352200 · 12352200
NACRES
22 · NA.22
Symbol(GHS)
7 · GHS07
Signal word
Warning
Hazard statements
315 · H315-H319-H335
Precautionary statements
280 · P280-P302+P352-P362+P364
PPE
95 · Eyeshields, Gloves, type N95 (US)
Safety Statements
24 · 24/25
WGK Germany
3 · 3
HS Code
29349990 · 29349990
Storage Class
11 · 11 - Combustible Solids
REACH Registrations
Active