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Cyclopamine

HCID 442972
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Basic information

CAS
4449-51-8
Standard SMILES
CC1=C2C[C@H]3[C@@H](CC=C4C[C@@H](O)CC[C@@]43C)[C@@H]2CC[C@]12O[C@@H]1C[C@H](C)CN[C@H]1[C@H]2C
InChIKey
QASFUMOKHFSJGL-LAFRSMQTSA-N
Molecular formula
C27H41NO2
Average molar mass
411.6 g/mol
Monoisotopic mass
411.31372955

Overview

Cyclopamine is a member of piperidines. It has a role as a glioma-associated oncogene inhibitor.

Names & identifiers

Preferred name
Cyclopamine
IUPAC
(3S,3'R,3'aS,6'S,6aS,6bS,7'aR,9R,11aS,11bR)-3',6',10,11b-tetramethylspiro[2,3,4,6,6a,6b,7,8,11,11a-decahydro-1H-benzo[a]fluorene-9,2'-3a,4,5,6,7,7a-hexahydro-3H-furo[3,2-b]pyridine]-3-ol
English name
Cyclopamine
Molecular formula
C27H41NO2
Molecular weight
411.62

Names & synonyms

CYCLOPAMINE4449-51-811-Deoxojervine11-DeoxyjervineAlkaloid VDTXSID60437093,4'-DinitroflavoneZH658AJ192NSC-734950Veratraman-3-ol, 17,23-epoxy-, (3beta,23beta)-(3beta23R)-17,23-Epoxyveratraman-3-olDTXCID4023709
Show more names
alkaloidvCyclopaminCompound T352511-deoxo-jervinCYCLOPAMINE(RG)Cyclopamine 99+%Cyclopamine, >=98%
(3S,3'R,3'aS,6'S,6aS,6bS,7'aR,9R,11aS,11bR)-3',6',10,11b-tetramethylspiro[2,3,4,6,6a,6b,7,8,11,11a-decahydro-1H-benzo[a]fluorene-9,2'-3a,4,5,6,7,7a-hexahydro-3H-furo[3,2-b]pyridine]-3-ol(2'R,3S,3'R,3'aS,6'S,6aS,6bS,7'aR,11aS,11bR)-1,2,3,3'a,4,4',5',6,6',6a,6b,7,7',7'a,8,11,11a,11b-Octadecahydro-3',6',10,11b-tetramethylspiro[9H-benzo[a]fluorene-9,2'(3'H)-furo[3,2-b]pyridin]-3-ol(2'R,3S,3'R,3'aS,6'S,6aS,6bS,7'aR,11aS,11bR)-1,2,3,3'a,4,4',5',6,6',6a,6b,7,7',7'a,8,11,11a,11b-Octadecahydro-3',6',10,11b-tetramethylspiro(9H-benzo(a)fluorene-9,2'(3'H)-furo(3,2-b)pyridin)-3-ol(3S,3'R,3'aS,6'S,6aS,6bS,7'aR,9R,11aS,11bR)-3',6',10,11b-tetramethylspiro(2,3,4,6,6a,6b,7,8,11,11a-decahydro-1H-benzo(a)fluorene-9,2'-3a,4,5,6,7,7a-hexahydro-3H-furo(3,2-b)pyridine)-3-olRefChem:129819(1'S,2R,2'R,3R,3aS,5'S,6S,7aR,10'S,11'S)-2',3,6,15'-tetramethyl-3a,4,5,6,7,7a-hexahydro-3H-spiro(furo(3,2-b)pyridine-2,14'-tetracyclo(8.7.0.02,7.011,16)heptadecane)-7',15'-dien-5'-ol628-058-8Jervine, 11-deoxo-

Properties

Computed structural properties

XLogP
3.5
Topological polar surface area
41.5 Ų
Hydrogen bond donors
2
Hydrogen bond acceptors
3
Rotatable bonds
0
Heavy atoms
30
Formal charge
0
Complexity
801

Experimental & physicochemical properties

Collision Cross Section218.7 Ų [M+H]+ [CCS Type: DT; Buffer gas: N2; Ionization: APCI+; Dataset: TOXCAST; Source Identifier: DTXSID6043709]

Physicochemical properties

Melting point
236 · 236-238°C
Boiling point
531.29 °C · 531.29°C (rough estimate)
Density
1.0274 · 1.0274 (rough estimate)
refractive index
1.64 · 1.6400 (estimate)
storage temp.
-20 °C · Keep in dark place,Inert atmosphere,Store in freezer, under -20°C
solubility
DMSO: soluble
form
solid
pka
15.05 · 15.05±0.70(Predicted)
color
White
Stability
20 °C · Store in Freezer at - 20°C
InChIKey
QASFUMOKHFSJGL-LAFRSMQTSA-N
SMILES
C1C2[C@@]([H])(CC[C@@]3([C@H](C)[C@]4([H])NC[C@@H](C)C[C@@]4([H])O3)C=2C)[C@@]2([H])[C@@]1([H])[C@@]1(C)CC[C@H](O)CC1=CC2

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

GHS classification

GHS Classification · 4 items

Warning

H341 (88.6%): Suspected of causing genetic defects [Warning Germ cell mutagenicity]

P203, P280, P318, P405, and P501 (click each P-code to see the statement)

Aggregated GHS information provided per 44 reports by companies from 5 notifications to the ECHA C&L Inventory. Each notification may be associated with multiple companies.

Hazard information

Hazard Classes and CategoriesMuta. 2 (88.6%)

Toxicology

Toxicity Summary · 3 items

IThe steroidal alkaloid cyclopamine was isolated from the plant Veratrum californicum in the late 1960's and identified as the teratogen responsible for craniofacial birth defects including cyclops in the offspring of sheep grazing on mountain ranges in the western United States. Cyclopamine inhibits the hedgehog (Hh) signaling pathway, which plays a critical role in embryonic development. Also, aberrant Hh signaling has been implicated in several types of cancer, and inhibitors of the Hh signaling pathway, including cyclopamine derivatives, have been targeted as potential treatments for certain cancers and other diseases associated with the Hh signaling pathway.

Cyclopamine, a steroidal alkaloid, is found in the corn lily (Veratrum californicum). Several species of the Veratrum genus are associated with toxicity in humans and animals. The principal toxins are steroid alkaloids, and they act by increasing the permeability of the sodium channels of nerve cells, causing them to fire continuously. The increased stimulation results in a reflex that causes the Bezold-Jarisch reflex (hypotension, bradycardia and apnea). Various Veratrum extracts had been marketed as antihypertensive drugs, but were withdrawn from the market because of a narrow therapeutic index. Following the ingestion of Veratrum alkaloids, the expected signs and symptoms include vomiting and abdominal pain, followed by cardiovascular effects such as bradycardia, hypotension, cardiac conduction abnormalities, and death. Teratogenic effects may occur to the fetuses of animals that have grazed on Veratrum californicum. The onset of symptoms occurs between 30 minutes and four hours, and the duration of the illness can range from one to 10 days. Treatment consists of supportive care, with an emphasis on hemodynamic stability with fluid replacement, atropine and vasopressors. With prompt supportive care, patients typically make a full recovery within 24 hours.

Chemistry & industry

Pharmacology

Mechanism of Action · 1 item

A NUMBER OF VERATRUM ALKALOIDS WERE TESTED IN PREGNANT SHEEP FOR TERATOGENICITY. THE COMPOUNDS JERVINE, CYCLOPAMINE...AND CYCLOPOSINE...PRODUCED DEFORMITIES SIMILAR TO NATURAL CASES. THE 3 TERATOGENIC COMPOUNDS ARE CLOSELY RELATED STEROIDAL FURANOPIPERIDINES, BUT CYCLOPAMINE IS THE TERATOGEN OF NATURAL IMPORTANCE BECAUSE OF PLANT CONCN. CLOSELY RELATED COMPD DEVOID OF THE FURAN RING DID NOT PRODUCE CYCLOPIA IN SHEEP, SUGGESTING THAT AN INTACT FURAN RING WAS REQUIRED FOR ACTIVITY, PERHAPS CONFERRING SOME ESSENTIAL CONFIGURATION ON THE MOLECULE.

Metabolism/MetabolitesConversion to teratogen of cyclopamine by rumen microorganisms is not essential. Indeed, ruminant sheep and non-ruminant rabbits were about equally susceptible to cyclopamine on a body weight basis.
Absorption, Distribution and Excretion · 1 item

The Veratrum genus is composed of plants containing a diverse set of steroidal alkaloids. Veratrum plant material has been utilized for centuries as herbal medicines. The alkaloids have such a low therapeutic index that they are not used in modern medicine. Veratrum parviflorum, commonly known as Appalachian bunchflower, contains the steroidal alkaloids cyclopamine along with other toxic alkaloids such as jervine, veratramine, veratridine, and verazine. This publication is about an inadvertent ingestion of Veratrum parviflorum by hikers in Georgia. It allowed for the detection, and in several instances identification of alkaloids from the plant, and correlated their presence within patient blood and breast milk specimens. Eight patients, three male and five female, presented in the spring of 2020 and 2021 with symptoms requiring emergent medical attention after ingestion of Veratrum parviflorum. All patients believed the plants to be a local native species of wild leek, Allium tricoccum, locally known as ramps. Plants were identified using photographs as well as fresh and cooked plant material provided by patients, in consultation with botanists at the University of Georgia Herbarium. Veratrum parviflorum plant material, and patient serum and breast milk were analyzed by high performance liquid chromatography-quadrupole time-of-flight mass spectrometry (HPLC-QTOF) to identify steroidal alkaloids.The Veratrum parviflorum extract was confirmed to contain cyclopamine, veratramine, jervine, and muldamine. Two out of the eight patients had detectable concentrations of Veratrum alkaloids. Of the alkaloids identified in the plant, cyclopamine and jervine were detected within patient serum, and cyclopamine and veratramine were observed to be present in breast milk. This is the second report of V. parviflorum poisoning and reports for the first time the presence of muldamine and jervine within veratrum parviflorum. Also, this work provided the first identification of Veratrum alkaloids in breast milk. The findings presented herein add to literature record causative agents contributing to the toxicity of veratrum parviflorum when ingested and potential for secondary poisoning through breastfeeding. Veratrum parviflorum toxicity was observed to cause nausea, vomiting, hypotension, bradycardia, abdominal pain, light-headedness, blurred vision, and tingling in the arms. Patients experiencing mild symptoms improved with supportive care, IV fluids, and antiemetics, but hemodynamically unstable patients required atropine and vasopressors. This study demonstrated that more lipophilic Veratrum alkaloids can be passed along in breast milk.

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Compound notes

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Database identifiers

CAS
4449-51-8
PubChem CID
442972
DTXSID
DTXSID6043709
ChEMBL
CHEMBL254129
ChEBI
CHEBI:4021
UNII
ZH658AJ192
EC Number
628-058-8
EWG's Food Scores
1 · 1
FDA UNII
658 AJ192 · ZH658AJ192
UNSPSC Code
12352116 · 12352116
NACRES
77 · NA.77
Symbol(GHS)
6 · GHS06,GHS08
Signal word
Danger
Hazard statements
301 · H301-H360D
Precautionary statements
202 · P202-P264-P270-P280-P301+P310-P405
Hazard Codes
Xi
Safety Statements
22 · 22-24/25
WGK Germany
3 · 3
RTECS
750000 · GY0750000
HS Code
29349990 · 29349990
Storage Class
6.1 C · 6.1C - Combustible acute toxic Cat.3toxic compounds or compounds which causing chronic effects
Hazard Classifications
3 OralRepr · Acute Tox. 3 OralRepr. 1B
Hazardous Substances Data
4449 · 4449-51-8(Hazardous Substances Data)

Cyclopamine causes usually fatal birth defects. It can prevent the fetal brain from dividing into two lobes (holoprosencephaly) and cause the development of a single eye (cyclopia). It does so by inhibiting the hedgehog pathway (Hh). Cyclopamine inhibits the Hh by influencing the balance between the active and inactive forms of the smoothened protein. Cyclopamine is useful in studying the role of Hh in normal development, and as a potential treatment for certain cancers in which Hh is overexpressed. Cyclopamine acts as a primary inhibitor of the hedgehog signaling pathway in cells. This pathway named for the ligand for the signal protein, is used by cells to help them react to external chemical signals. The pathway carries out important functions in embryonic development and when it goes awry, deformities can occur. However, errant activation of the pathway can also trigger cancer in adult humans, leading to basal cell carcinoma, medulloblastoma, rhabdomyosarcoma, and prostate, pancreatic and breast cancers. A way of controlling the pathway using cyclopamine could turn this problem on its head and provide a way to treat cancer. (Wikipedia) Cyclopamine inhibits the Hh pathway by binding to and preventing the activation of Smoothened (Smo), preventing downstream target gene regulation. (A15437)

Signs and Symptoms · 1 item

Following the ingestion of Veratrum alkaloids, the expected signs and symptoms include vomiting and abdominal pain, followed by cardiovascular effects such as bradycardia, hypotension, cardiac conduction abnormalities, and death. The onset of symptoms occurs between 30 minutes and four hours, and the duration of the illness can range from one to 10 days.

Natural Pollution Sources...DERIVED FROM THE PLANT VERATRUM CALIFORNICUM.
Carcinogen ClassificationNo indication of carcinogenicity to humans (not listed by IARC).
Non-Human Toxicity Excerpts · 5 items

CYCLOPAMINE FED TO PREGNANT EWES DURING DAY 28, 29, AND 30 OF GESTATION, PRODUCED CONGENITAL DEFORMITIES OF LIMBS. THESE DEFORMITIES INCLUDED SHORTENING OF THE METACARPAL OR METATARSAL BONES.

MALFORMATIONS IN HATCHED CHICKS WERE PRODUCED BY DIRECT APPLICATION OF 1-2 MG OF CYCLOPAMINE TO THE EMBRYONIC SHIELD OF WINDOWED CHICKEN EGGS. ...INTRAUTERINE INJECTION OF AS LITTLE AS 1-2 MG OF CYCLOPAMINE PRODUCED DEFORMITIES /IN SHEEP/.

FETAL RABBITS BECAME MALFORMED GROSSLY SIMILAR TO LAMBS UPON MATERNAL INGESTION OF CYCLOPAMINE. THE CYCLOPIA AND RELATED CEPHALIC MALFORMATIONS OCCURRED WHEN INGESTION TOOK PLACE ON THE 7TH DAY OF GESTATION.

Cyclopamine produced deformities in rats, mice, and hamsters gavaged during the primitive streak/neural plate stage of development with as little as 240, 180, and 170 mg/kg, respectively, but cyclopics were not evident. In rats, microphthalmia and cebocephalia predominated; in mice, a few exencephalics resulted; whereas in hamsters, cebocephalia, encephalocele (cranial bleb), exencephaly, and hare lip resulted.

For more Non-Human Toxicity Excerpts (Complete) data for CYCLOPAMINE (6 total), please visit the HSDB record page.

Antidote and Emergency Treatment · 1 item

Following the ingestion of Veratrum alkaloids, the onset of symptoms occurs between 30 minutes and four hours, and the duration of the illness can range from one to 10 days. Treatment consists of supportive care, with an emphasis on hemodynamic stability with fluid replacement, atropine and vasopressors. With prompt supportive care, patients typically make a full recovery within 24 hours.

Drug Effects during Lactation · 1 item

Appalachian bunchflower (Veratrum parviflorum) found in the Southeastern United States contains several cardiotoxic alkaloids, such as cyclopamine, jervine, veratramine. It has no known use in lactation. A woman who mistakenly ate Appalachian bunchflower had veratramine and cyclopamine in her milk, although the toxicological significance of their presence in milk for the breastfed infant is unknown.

Safety data

wgk
3
rtecs
GY0750000
hs_code
29349990
Signal word
Danger
Symbol(GHS)
GHS06,GHS08
hazard_code
Xi
safety_code
22-24/25
Storage Class
6.1C - Combustible acute toxic Cat.3toxic compounds or compounds which causing chronic effects
Hazard statements
H301-H360D
Hazard Classifications
Acute Tox. 3 OralRepr. 1B
Precautionary statements
P202-P264-P270-P280-P301+P310-P405
Hazardous Substances Data
4449-51-8(Hazardous Substances Data)

Uses & manufacturing

Uses · 1 item

It is a teratogen isolated from the corn lily (Veratrum californicum) that causes usually fatal birth defects. Cyclopamine is useful in studying the role of Hh in normal development, and as a potential treatment for certain cancers in which Hh is overexpressed.

General Manufacturing Information11-Deoxojervine is a precursor for the biosynthesis of jervine in Veratrum grandiflorum.
Applications · 4 items

DescriptionCyclopamine is a natural steroidal alkaloid that inhibits signaling through the hedgehog pathway at the level of the pathway activator Smoothened. By altering gene expression in this signaling sequence, cyclopamine induces defects in morphogenesis, first observed in chicks and sheep as cyclopia. As a readout of action, cyclopamine inhibits hedgehog-dependent expression of Pax7 with an IC50 value of 24 nM. Although teratogenic during development, cyclopamine has potential applications in the treatment of cancer.

UsesCyclopamine antibacterial properties. Cyclopamine demonstrates teratogenic properties and has been shown to reverse effects of oncogenic mutations in Smoothened and Patched.

UsesHas antibacterial properties. Cyclopamine demonstrates teratogenic properties and has been shown to reverse effects of oncogenic mutations in Smoothened and Patched.1 Solubility: 1mg dissolves in 0.2ml DMSO with heating to approximately 70 degrees (ca. 12 mmol sol.) Solubility: 4mg dissolves in 1ml 95% Ethanol

UsesCyclopamine, is used as a hedgehog [Hh] signaling pathway and Smo inhibitor. It depletes stem-like cancer cells in glioblastoma and blocks tumor engraftment. Can also be used to induce differentiation of human embryonic stem cells (hESCs) into hormone-expressing endocrine cells.

Upstream & downstream products

Downstream products

4-Hydroxy-3-nitrobenzyl alcohol

Additional notes

DefinitionChEBI: Cyclopamine is a member of piperidines. It has a role as a glioma-associated oncogene inhibitor.