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4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol

HCID 443199
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Basic information

CAS
263016-94-0
Standard SMILES
C[C@](O)(CO)[C@H](O)COP(=O)(O)OP(=O)(O)OC[C@H]1O[C@@H](n2ccc(N)nc2=O)[C@H](O)[C@@H]1O
InChIKey
YFAUKWZNPVBCFF-XHIBXCGHSA-N
Molecular formula
C14H25N3O14P2
Average molar mass
521.31 g/mol
Monoisotopic mass
521.08117648

Overview

4-CDP-2-C-methyl-D-erythritol is an alditol 4-phosphate, a tetritol phosphate and a nucleotide-alditol. It has a role as an Escherichia coli metabolite. It is a conjugate acid of a 4-CDP-2-C-methyl-D-erythritol(2-).

Names & identifiers

Preferred name
4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
IUPAC
[[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3S)-2,3,4-trihydroxy-3-methylbutyl] hydrogen phosphate
English name
4-Diphosphocytidyl-2-C-methyl-D-erythritol (CDP-ME)
Molecular formula
C14H25N3O14P2
Molecular weight
521.31

Names & synonyms

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritolFB44VKC5JDCDP-methyl-D-erythritol1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(((hydroxy((2R,3S)-2,3,4-trihydroxy-3-methylbutoxy)phosphoryl phosphonato)oxy)methyl)oxolan-2-yl)-4-imino-1,4-dihydropyrimidin-2-olate1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-[({hydroxy[(2R,3S)-2,3,4-trihydroxy-3-methylbutoxy]phosphoryl phosphonato}oxy)methyl]oxolan-2-yl]-4-imino-1,4-dihydropyrimidin-2-olateRefChem:5157634-CDP-2-C-methyl-D-erythritol4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL263016-94-0[[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3S)-2,3,4-trihydroxy-3-methylbutyl] hydrogen phosphatecytidine 5'-{3-[(2R,3S)-2,3,4-trihydroxy-3-methylbutyl] dihydrogen diphosphate}SCHEMBL254288
Show more names
4-Diphosphocytidyl-2-C-methyl-D-erythritol (CDP-ME)Cytidine 5'-(trihydrogen diphosphate), P'-[(2R,3S)-2,3,4-trihydroxy-3-methylbutyl] ester
CHEMBL1231708CHEBI:16578DTXSID50332065DB03687PD059566NS00070430Q27150914-Diphosphocytidyl-2-C-methyl-D-erythritol (CDP-ME

Properties

Computed structural propertiesFilling in

XLogP
-5.7
Topological polar surface area
271 Ų
Hydrogen bond donors
8
Hydrogen bond acceptors
14
Rotatable bonds
11
Heavy atoms
33
Formal charge
0
Complexity
885

Experimental & physicochemical properties

DrugsPharmaceuticals -> Listed in ZINC15

Physicochemical properties

Boiling point
861.3 · 861.3±75.0 °C(Predicted)
Density
2.02 · 2.02±0.1 g/cm3(Predicted)
pka
1.14 · 1.14±0.50(Predicted)
FDA UNII
44 VKC5JD · FB44VKC5JD

Chemistry & industry

Additional notes

DefinitionChEBI: 4-CDP-2-C-methyl-D-erythritol is a nucleotide-alditol, an alditol 4-phosphate and a tetritol phosphate. It has a role as an Escherichia coli metabolite. It is a conjugate acid of a 4-CDP-2-C-methyl-D-erythritol(2-).

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Database identifiers

CAS
263016-94-0
PubChem CID
443199
DTXSID
DTXSID50332065
ChEMBL
CHEMBL1231708
ChEBI
CHEBI:16578
UNII
FB44VKC5JD
Nikkaji
J1.231.800F