Basic information
- CAS
189453-10-9- Standard SMILES
C/C1=C/C[C@@H](/C(C)=C/c2csc(C)n2)OC(=O)C[C@H](O)C(C)(C)C(=O)[C@H](C)[C@@H](O)[C@@H](C)CCC1- InChIKey
XOZIUKBZLSUILX-GIQCAXHBSA-N- Molecular formula
- C27H41NO5S
- Average molar mass
- 491.7 g/mol
- Monoisotopic mass
- 491.27054441
Overview
Epothilone D is an epithilone that is epithilone C in which the hydrogen at position 13 of the oxacyclohexadec-13-ene-2,6-dione macrocycle has been replaced by a methyl group. It has a role as a microtubule-stabilising agent.
Names & identifiers
- Preferred name
- Epothilone D
- IUPAC
- (4S,7R,8S,9S,13Z,16S)-4,8-dihydroxy-5,5,7,9,13-pentamethyl-16-[(E)-1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-1-oxacyclohexadec-13-ene-2,6-dione
- English name
- Epothilone D
- Molecular formula
- C27H41NO5S
- Molecular weight
- 491.68
Names & synonyms
Show more names
Database identifiers
- CAS
189453-10-9- PubChem CID
- 447865
- DTXSID
DTXSID70880053- ChEMBL
CHEMBL96172- ChEBI
CHEBI:29579- UNII
- T0358E0YUF
Properties
Computed structural properties
- XLogP
- 5
- Topological polar surface area
- 125 Ų
- Hydrogen bond donors
- 2
- Hydrogen bond acceptors
- 7
- Rotatable bonds
- 2
- Heavy atoms
- 34
- Formal charge
- 0
- Complexity
- 777
Experimental & physicochemical properties
Physicochemical properties
- Melting point
- 63 · 63-66°C
- alpha
- 22 · D22 -61.3° (c = 2.5 in methanol)
- Boiling point
- 663.7 · 663.7±55.0 °C(Predicted)
- Density
- 1.084 · 1.084±0.06 g/cm3(Predicted)
- storage temp.
- -20 °C · -20°C Freezer
- solubility
- Soluble in DMSO
- form
- solid
- pka
- 13.47 · 13.47±0.70(Predicted)
- color
- white to off-white
- InChIKey
- XOZIUKBZLSUILX-GIQCAXHBSA-N
- SMILES
- O1[C@H](/C(/C)=C/C2=CSC(C)=N2)CC=C(C)CCC[C@H](C)[C@H](O)[C@@H](C)C(=O)C(C)(C)[C@@H](O)CC1=O |t:13|
- NCI Dictionary of Cancer Terms
- -862 · epothilone D; KOS-862
- FDA UNII
- 358 E0YUF · T0358E0YUF
- NCI Drug Dictionary
- epothilone D
Safety & regulation
Hazard information
Regulatory Information
Oxacyclohexadec-13-ene-2,6-dione, 4,8-dihydroxy-5,5,7,9,13-pentamethyl-16-(1E)-1-methyl-2-(2-methyl-4-thiazolyl)ethenyl-, (4S,7R,8S,9S,13Z,16S)-: Does not have an individual approval but may be used as a component in a product covered by a group standard. It is not approved for use as a chemical in its own right.
Chemistry & industry
Pharmacology
ATC Code
L - Antineoplastic and immunomodulating agents
QL - Antineoplastic and immunomodulating agents
Applications
DescriptionEpothilones are microtubule-stabilizing agents with potential anti-neoplastic actions. They are natural macrolides that have high potency in both taxane-sensitive and taxane-resistant models. Epothilone D is a desoxy form of epothilone B (Item No. 10924) that inhibits the growth of a variety of cancer cells both in vitro (IC50 values range from 0.97 to 21 nM) and in mice. Epothilone D is brain penetrant and reduces neurodegeneration in aged tau transgenic mice. Effects include improved axonal transport, decreased tau neuropathology, and reduced hippocampal neuron loss. Epothilone D also rescues microtubule defects and attenuates nigrostriatal degeneration in a mouse model of Parkinson’s disease.
UsesEpothilones are polyketide natural products that inhibit cancer cells by a mechanism similar to paclitaxel, and also are effective against paclitaxel-resistant tumours. Epothilone D is in phase I clinical testing of in patients with advanced solid tumours. Epothilone D is a cytotoxic macrolide that stabilises malignant cells'' microtubules and arrests mitosis, a characteristic it shares with other epothilones. They bind to the same hepatic sites as does paclitaxel (Taxol) in a 1:1 stoichiometric ratio of a, b-tubulin heterodimers.
Preparation methods
PreparationBio-fermentation method Culture medium:CNST medium: KNO3 0.05%, Na2HPO4 0.025%, MgSO4·7H2O 0.1%, FeC3 0.001%, agar 2%, trace element solution 1 mL/L, pH 7.2. Autoclaved at 1×105 Pa for 20 min. M26 medium:Potato starch 8.0 g/L, soybean peptone 2.0 g/L, glucose 2.0 g/L, yeast powder 2.0 g/L, MgSO4·7H2O 1.0 g/L, CaCl2 1.0 g/L, EDTA-Fe3+ 1 mL/L, trace elements 1 mL/L, pH adjusted to 7.2 with KOH. Initial Fermentation Medium:Dextrin 0.3%, sucrose 0.07%, glucose 0.02%, soybean meal 0.17%, magnesium sulfate heptahydrate 0.17%, anhydrous calcium chloride 0.3%, EDTA-Fe3+ 2 mL/L, trace elements (TE) 0.5 mL/L, pH 7.2, resin XAD-16 2%. Autoclaved at 1×105 Pa for 20 min. Cultivation Method> Seed Culture:The inoculum preserved in solid slant medium was inoculated onto CNST plates containing sterilized filter paper. The plates were inverted and cultured at 30℃ for 5-7 days. Then, the culture was transferred to M26 medium in 50 mL/250 mL Erlenmeyer flasks and cultured on a shaker at 30℃ and 170 r/min for 72 h to obtain the seed culture for fermentation. Fermentation culture:The obtained seed liquid was inoculated into the fermentation medium at an inoculation rate of 5% (V/V) and cultured on a shaker. The fermentation system consisted of 300 mL Erlenmeyer flasks containing 50 mL of liquid. The culture was carried out on a shaker at 30℃ and 170 r/min for 5 days.
Upstream & downstream products
Downstream products
Suppliers100 total
Additional notes
DefinitionChEBI: An epithilone that is epithilone C in which the hydrogen at position 13 of the oxacyclohexadec-13-ene-2,6-dione macrocycle has been replaced by a methyl group.
Related reactions
Compound notes
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