Epothilone D

HCID 447865

Basic information

CAS
189453-10-9
Standard SMILES
C/C1=C/C[C@@H](/C(C)=C/c2csc(C)n2)OC(=O)C[C@H](O)C(C)(C)C(=O)[C@H](C)[C@@H](O)[C@@H](C)CCC1
InChIKey
XOZIUKBZLSUILX-GIQCAXHBSA-N
Molecular formula
C27H41NO5S
Average molar mass
491.7 g/mol
Monoisotopic mass
491.27054441

Overview

Epothilone D is an epithilone that is epithilone C in which the hydrogen at position 13 of the oxacyclohexadec-13-ene-2,6-dione macrocycle has been replaced by a methyl group. It has a role as a microtubule-stabilising agent.

Names & identifiers

Preferred name
Epothilone D
IUPAC
(4S,7R,8S,9S,13Z,16S)-4,8-dihydroxy-5,5,7,9,13-pentamethyl-16-[(E)-1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-1-oxacyclohexadec-13-ene-2,6-dione
English name
Epothilone D
Molecular formula
C27H41NO5S
Molecular weight
491.68

Names & synonyms

Epothilone D189453-10-9Desoxyepothilone b(-)-Desoxyepothilone BKOS-86212,13-Desoxyepothilone B(-)-Epothilone DEpothilon DNSC-703147KOS 86212,13-Deoxyepothilone BEpothiolone D
Show more names
Epo DCS-1161Ebomycin12,13-Deoxyepo13-Desoxyepothilone BEpothilone D (KOS-862)
DEpoB cpdNSC 703147T0358E0YUFEpothilone B, desoxy12,13-desoxyepothilone b, cisKOS862Oxacyclohexadec-13-ene-2,6-dione, 4,8-dihydroxy-5,5,7,9,13-pentamethyl-16-[(1E)-1-methyl-2-(2-methyl-4-thiazolyl)ethenyl]-, (4S,7R,8S,9S,13Z,16S)-R1492

Database identifiers

CAS
189453-10-9
PubChem CID
447865
DTXSID
DTXSID70880053
ChEMBL
CHEMBL96172
ChEBI
CHEBI:29579
UNII
T0358E0YUF

Properties

Computed structural properties

XLogP
5
Topological polar surface area
125 Ų
Hydrogen bond donors
2
Hydrogen bond acceptors
7
Rotatable bonds
2
Heavy atoms
34

Experimental & physicochemical properties

LipidsPolyketides [PK] -> Macrolides and lactone polyketides [PK04]

Physicochemical properties

Melting point
63 · 63-66°C
alpha
22 · D22 -61.3° (c = 2.5 in methanol)
Boiling point
663.7 · 663.7±55.0 °C(Predicted)
Density
1.084 · 1.084±0.06 g/cm3(Predicted)
storage temp.
-20 °C · -20°C Freezer
solubility
Soluble in DMSO

Safety & regulation

Hazard information

Regulatory Information · 1 item

Oxacyclohexadec-13-ene-2,6-dione, 4,8-dihydroxy-5,5,7,9,13-pentamethyl-16-(1E)-1-methyl-2-(2-methyl-4-thiazolyl)ethenyl-, (4S,7R,8S,9S,13Z,16S)-: Does not have an individual approval but may be used as a component in a product covered by a group standard. It is not approved for use as a chemical in its own right.

Chemistry & industry

Pharmacology

ATC Code · 2 items

L - Antineoplastic and immunomodulating agents

QL - Antineoplastic and immunomodulating agents

Mechanism of ActionThe principal mechanism of the epothilone class is inhibition of microtubule function. Microtubules are essential to cell division, and epothilones therefore stop cells from properly dividing.
MeSH Pharmacological ClassificationAgents that interact with TUBULIN to inhibit or promote polymerization of MICROTUBULES.
Applications · 2 items

DescriptionEpothilones are microtubule-stabilizing agents with potential anti-neoplastic actions. They are natural macrolides that have high potency in both taxane-sensitive and taxane-resistant models. Epothilone D is a desoxy form of epothilone B (Item No. 10924) that inhibits the growth of a variety of cancer cells both in vitro (IC50 values range from 0.97 to 21 nM) and in mice. Epothilone D is brain penetrant and reduces neurodegeneration in aged tau transgenic mice. Effects include improved axonal transport, decreased tau neuropathology, and reduced hippocampal neuron loss. Epothilone D also rescues microtubule defects and attenuates nigrostriatal degeneration in a mouse model of Parkinson’s disease.

UsesEpothilones are polyketide natural products that inhibit cancer cells by a mechanism similar to paclitaxel, and also are effective against paclitaxel-resistant tumours. Epothilone D is in phase I clinical testing of in patients with advanced solid tumours. Epothilone D is a cytotoxic macrolide that stabilises malignant cells'' microtubules and arrests mitosis, a characteristic it shares with other epothilones. They bind to the same hepatic sites as does paclitaxel (Taxol) in a 1:1 stoichiometric ratio of a, b-tubulin heterodimers.

Preparation methods · 1 item

PreparationBio-fermentation method Culture medium:CNST medium: KNO3 0.05%, Na2HPO4 0.025%, MgSO4·7H2O 0.1%, FeC3 0.001%, agar 2%, trace element solution 1 mL/L, pH 7.2. Autoclaved at 1×105 Pa for 20 min. M26 medium:Potato starch 8.0 g/L, soybean peptone 2.0 g/L, glucose 2.0 g/L, yeast powder 2.0 g/L, MgSO4·7H2O 1.0 g/L, CaCl2 1.0 g/L, EDTA-Fe3+ 1 mL/L, trace elements 1 mL/L, pH adjusted to 7.2 with KOH. Initial Fermentation Medium:Dextrin 0.3%, sucrose 0.07%, glucose 0.02%, soybean meal 0.17%, magnesium sulfate heptahydrate 0.17%, anhydrous calcium chloride 0.3%, EDTA-Fe3+ 2 mL/L, trace elements (TE) 0.5 mL/L, pH 7.2, resin XAD-16 2%. Autoclaved at 1×105 Pa for 20 min. Cultivation Method> Seed Culture:The inoculum preserved in solid slant medium was inoculated onto CNST plates containing sterilized filter paper. The plates were inverted and cultured at 30℃ for 5-7 days. Then, the culture was transferred to M26 medium in 50 mL/250 mL Erlenmeyer flasks and cultured on a shaker at 30℃ and 170 r/min for 72 h to obtain the seed culture for fermentation. Fermentation culture:The obtained seed liquid was inoculated into the fermentation medium at an inoculation rate of 5% (V/V) and cultured on a shaker. The fermentation system consisted of 300 mL Erlenmeyer flasks containing 50 mL of liquid. The culture was carried out on a shaker at 30℃ and 170 r/min for 5 days.

Upstream & downstream products

Downstream products

Suppliers100 total

南通飞宇生物科技有限公司0513-68819626 15152877458 · [email protected]
武汉英诺医药科技有限公司+86-027-59232304 15387063101 · [email protected]
成都超九八生物科技有限公司13348960310 13348960310 · [email protected]
咸宁深蓝生物医药研发有限公司18171815831 · [email protected]
湖北科乐精细化工有限公司027-59101668 19945030958 · [email protected]

Additional notes

DefinitionChEBI: An epithilone that is epithilone C in which the hydrogen at position 13 of the oxacyclohexadec-13-ene-2,6-dione macrocycle has been replaced by a methyl group.

Related reactions

23 records

Compound notes

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