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(4R)-4-ammonio-3-oxo-1,2-oxazolidin-2-ide

HCID 51670069
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Basic informationOverviewNames & identifiersPropertiesSafety & regulationChemistry & industryRelated reactionsCompound notes
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Basic information

CAS
68-41-7
Standard SMILES
[NH3+][C@@H]1CON=C1[O-]
InChIKey
DYDCUQKUCUHJBH-UWTATZPHSA-N
Molecular formula
C3H6N2O2
Average molar mass
102.09 g/mol
Monoisotopic mass
102.04292744

Overview

D-cycloserine zwitterion is a zwitterion resulting from the transfer of a proton from the ring nitrogen to the primary amino group of D-cycloserine. The major species at pH 7.3. It is a tautomer of a D-cycloserine.

Names & identifiers

Preferred name
(4R)-4-ammonio-3-oxo-1,2-oxazolidin-2-ide
IUPAC
(4R)-4-azaniumyl-4,5-dihydro-1,2-oxazol-3-olate
English name
D-Cycloserine
Molecular formula
C3H6N2O2
Molecular weight
102.09

Names & synonyms

cycloserine zwitterionD-cycloserine zwitterionalpha-cycloserine zwitterionCHEBI:74159D-4-amino-3-isoxazolidinone zwitterion(+)-4-amino-3-isoxazolidinone zwitterion(4R)-4-aminoisoxazolidin-3-one zwitterion(4R)-4-ammonio-3-oxo-1,2-oxazolidin-2-ideCYCLOSERINE(R)-4-AMINO-ISOXAZOLIDIN-3-ONED-4-AMINO-3-ISOXAZOLIDINONESEROMYCIN
Show more names
Cycloserin(+)-Cycloserinepa94NJ-21PA 94106-7

Database identifiers

CAS
68-41-7
PubChem CID
51670069
ChEBI
CHEBI:74159

Properties

Computed structural properties

XLogP
-0.3
Topological polar surface area
72.3 Ų
Hydrogen bond donors
1
Hydrogen bond acceptors
3
Rotatable bonds
0
Heavy atoms
7
Formal charge
0
Complexity
101

Experimental & physicochemical properties

Lipids · 2 items

Polyketides [PK] -> Non-ribosomal peptide/polyketide hybrids [PK14]

Polyketides [PK] -> Non-ribosomal peptide/polyketide hybrids [PK14]

LogP-0.9
Solubility · 2 items

Soluble

8.77e+02 g/L

Melting Point147 °C
Physical DescriptionSolid

Physicochemical properties

Melting point
147 °C · 147 °C (dec.)(lit.)
alpha
111 · 111 º (C=5, 2N NaOH)
Boiling point
191.38 °C · 191.38°C (rough estimate)
Density
1.3516 · 1.3516 (rough estimate)
refractive index
1.511 · 1.5110 (estimate)
storage temp.
-20 °C · Keep in dark place,Inert atmosphere,Store in freezer, under -20°C

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

Safety data

F
10-23
PPE
Eyeshields, Gloves, type N95 (US)
wgk
2
rtecs
NY2975000
hs_code
29419090
risk_code
5-20
Signal word
Warning
Symbol(GHS)
GHS07
hazard_code
Xn
safety_code
38-36/37-24/25
Storage Class
11 - Combustible Solids
Hazard statements
H315-H319-H335
Precautionary statements
P271-P261-P280
Hazardous Substances Data
68-41-7(Hazardous Substances Data)

Chemistry & industry

Pharmacology

Pharmacodynamics · 1 item

Cycloserine, a broad-spectrum antibiotic, may be bactericidal or bacteriostatic, depending on its concentration at the site of infection and the susceptibility of the organism. Cycloserine works by blocking the formation of these peptidoglycans. By doing this the walls of the bacteria become weak and it results in the death of the bacteria

Mechanism of Action · 1 item

Cycloserine is an analog of the amino acid D-alanine. It interferes with an early step in bacterial cell wall synthesis in the cytoplasm by competitive inhibition of two enzymes, L-alanine racemase, which forms D-alanine from L-alanine, and D-alanylalanine synthetase, which incorporates D-alanine into the pentapeptide necessary for peptidoglycan formation and bacterial cell wall synthesis.

Biological Half-LifeHalf-life in patients with normal renal function is 10 hours, and is prolonged in patients with impaired renal function.
Absorption, Distribution and ExcretionRapidly and almost completely absorbed (70 to 90%) from the gastrointestinal tract following oral administration.
Cellular LocationsCytoplasm
Applications · 6 items

UsesUsed as an antibiotic medicine in the treatment of drug-resistant Mycobacterium tuberculosis infection. Biochemical research

DescriptionD-Cycloserine (68-41-7) is a partial agonist at the glycine modulatory site of NMDA glutamatergic receptors.1Blocks kainate-induced seizures2and displays anticonvulsant effects3in rat models. D-Cycloserine facilitates synaptic plasticity but impairs glutamatergic neurotransmission in rat hippocampal slices.4Second-line drug for the treatment of tuberculosis. Enhances activity-dependent plasticity in human adults.5

UsesD-cycloserine has been used to inhibit serine hydroxymethyltransferase.

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Compound notes

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On this pageBasic informationOverviewNames & identifiersPropertiesSafety & regulationChemistry & industryRelated reactionsCompound notes
solubility
50 mg/mL, · water: soluble50mg/mL, clear, colorless to light yellow
pka
4.5 · pKa 4.5 (Uncertain)
form
powder
color
white to off-white
biological source
synthetic
optical activity
20 · [α]20/D +115.0±5.0°, c = 2% in H2O
Water Solubility
SOLUBLE
Sensitive
Air Sensitive
Merck
14 · 14,2751
BRN
80798 · 80798
BCS Class
3 · 3/1
Stability
2 years · Stable for 2 years from date of purchase as supplied. Solutions in distilled water may be stored at -20°C for up to 1 month.
InChI
1S/C3H6N2O2/c4-2-1-7-5-3(2)6/h2H,1,4H2,(H,5,6)/t2-/m1/s1
InChIKey
DYDCUQKUCUHJBH-UWTATZPHSA-N
SMILES
N[C@@H]1CONC1=O
CAS DataBase Reference
68 · 68-41-7(CAS DataBase Reference)
EWG's Food Scores
1 · 1
NCI Dictionary of Cancer Terms
D-cycloserine; Seromycin
FDA UNII
95 IK5KI84Z · 95IK5KI84Z
NCI Drug Dictionary
D-cycloserine
ATC code
4 AB01 · J04AB01
NIST Chemistry Reference
Cycloserine(68-41-7)
UNSPSC Code
12352209 · 12352209
NACRES
28 · NA.28
Protein binding
20 % · <20%
Excreted unchanged in urine
50 · 50-70%
Volume of distribution
0.11 · 0.11-0.26(L/kg)
Biological half-life
8 · 8-12 / Increased
Symbol(GHS)
7 · GHS07
Signal word
Warning
Hazard statements
315 · H315-H319-H335
Precautionary statements
271 · P271-P261-P280
PPE
95 · Eyeshields, Gloves, type N95 (US)
Hazard Codes
Xn
Risk Statements
5 · 5-20
Safety Statements
38 · 38-36/37-24/25
WGK Germany
2 · 2
RTECS
2975000 · NY2975000
F
10 · 10-23
HS Code
29419090 · 29419090
Storage Class
11 · 11 - Combustible Solids
Hazardous Substances Data
68 · 68-41-7(Hazardous Substances Data)

Usesantibacterial (tuberculostatic)

UsesD-Cycloserine inhibits cell wall biosynthesis (D-Ala peptide bond formation). D-Cycloserine also prevents conversion of D-Ala to L-Ala. D-Cycloserine is an bacteriostatic. D-Cycloserine is an antibiot ic against Gram-negative bacteria.

General DescriptionChemical structure: amino acid derivatives

Upstream & downstream products

Upstream raw materials

Calcium carbonateSoybean oilstreptomyces avermifilisAmmonium nitrateDextrinD-AlanineSOYBEAN MEALPotassium hydroxide1-alpha-amino-beta-chloropropionic acid hydroxamideSerine, O-amino-, methyl esterβ-Chloro-L-alanine methyl ester hydrochloride

Downstream products

(3R,6R)-3,6-Bis[(aminooxy)methyl]-2,5-piperazinedioneCarbamic acid, [(4R)-3-oxo-4-isoxazolidinyl]-, 1,1-dimethylethyl ester (9CI)
Additional notes · 1 item

DefinitionChEBI: D-cycloserine is a 4-amino-1,2-oxazolidin-3-one that has R configuration. It is an antibiotic produced by Streptomyces garyphalus or S. orchidaceus and is used as part of a multi-drug regimen for the treatment of tuberculosis when resistance to, or toxicity from, primary drugs has developed. An analogue of D-alanine, it interferes with bacterial cell wall synthesis in the cytoplasm by competitive inhibition of L-alanine racemase (which forms D-alanine from L-alanine) and D-alanine--D-alanine ligase (which incorporates D-alanine into the pentapeptide required for peptidoglycan formation and bacterial cell wall synthesis). It has a role as an antitubercular agent, an antiinfective agent, an antimetabolite, a metabolite and a NMDA receptor agonist. It is an organooxygen heterocyclic antibiotic, an organonitrogen heterocyclic antibiotic and a 4-amino-1,2-oxazolidin-3-one. It is a conjugate base of a D-cycloserine(1+). It is an enantiomer of a L-cycloserine. It is a tautomer of a D-cycloserine zwitterion.