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Brefeldin A

HCID 5287620
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Basic information

CAS
20350-15-6
Standard SMILES
C[C@H]1CCC/C=C/[C@@H]2C[C@H](O)C[C@H]2[C@H](O)/C=C/C(=O)O1
InChIKey
KQNZDYYTLMIZCT-KQPMLPITSA-N
Molecular formula
C16H24O4
Average molar mass
280.36 g/mol
Monoisotopic mass
280.16745924

Overview

Brefeldin A is a metabolite from Penicillium brefeldianum that exhibits a wide range of antibiotic activity. It has a role as a Penicillium metabolite.

Names & identifiers

Preferred name
Brefeldin A
IUPAC
(1R,2R,3E,7S,11E,13S,15S)-2,15-dihydroxy-7-methyl-6-oxabicyclo[11.3.0]hexadeca-3,11-dien-5-one
English name
Brefeldin A
Molecular formula
C16H24O4
Molecular weight
280.36

Names & synonyms

brefeldin AAscotoxinDecumbinCyanein20350-15-6SynergisidinNectrolide(+)-Brefeldin ANSC-89671NSC-56310NSC-107456NSC-244390
Show more names
BFABrefeldinCS-766cyanaeinNSC 107456
XG0D35F9K6DTXSID00880041NSC 89671CHEBI:48080(1R,2E,6S,10E,11aS,13S,14aR)-1,13-dihydroxy-6-methyl-1,6,7,8,9,11a,12,13,14,14a-decahydro-4H-cyclopenta[f]oxacyclotridecin-4-oneNSC89671(1R,2R,3E,7S,11E,13S,15S)-2,15-dihydroxy-7-methyl-6-oxabicyclo[11.3.0]hexadeca-3,11-dien-5-one4H-Cyclopent(f)oxacyclotridecin-4-one,1,6,7,8,9,11a-beta,12,13,14,14a-alpha-decahydro-1-beta-13-alpha-dihydroxy-6-beta-methyl-

Database identifiers

CAS
20350-15-6、60132-23-2
PubChem CID
5287620
DTXSID
DTXSID00880041
ChEMBL
CHEMBL19980
ChEBI
CHEBI:48080
UNII
XG0D35F9K6
EC Number
606-528-3、951-399-1
Nikkaji
J16.636G

Properties

Computed structural properties

XLogP
2
Topological polar surface area
66.8 Ų
Hydrogen bond donors
2
Hydrogen bond acceptors
4
Rotatable bonds
0
Heavy atoms
20
Formal charge
0
Complexity
388

Experimental & physicochemical properties

DrugsPharmaceuticals -> Antibiotics

Physicochemical properties

Melting point
200 · 200-205 °C
alpha
93 · 93 º (C=2 IN MEOH)
Boiling point
492.7 · 492.7±45.0 °C(Predicted)
Density
1.108 · 1.108±0.06 g/cm3(Predicted)
vapor pressure
0.56 hPa · 0.56 hPa ( 20 °C)
Flash point
87 °C · 87 °C
storage temp.
-20 °C · Sealed in dry,Store in freezer, under -20°C
solubility
10 mg/mL, · methanol: 10 mg/mL, clear, colorless to faintly yellow
form
Crystalline Powder
pka
12.92 · 12.92±0.60(Predicted)
color
White to almost white
biological source
Penicillium brefeldianum

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

GHS classification

GHS Classification · 4 items

Danger

H301 (97.3%): Toxic if swallowed [Danger Acute toxicity, oral]

P264, P270, P301+P316, P321, P330, P405, and P501 (click each P-code to see the statement)

Aggregated GHS information provided per 73 reports by companies from 4 notifications to the ECHA C&L Inventory.

Hazard information

Regulatory Information4H-Cyclopentfoxacyclotridecin-4-one, 1,6,7,8,9,11a,12,13,14,14a-decahydro-1,13-dihydroxy-6-methyl-, (1R,2E,6S,10E,11aS,13S,14aR)-: Does not have an individual approval but may be used under an appropriate group standard
Hazard Classes and CategoriesAcute Tox. 3 (97.3%)

Safety data

wgk
3
rtecs
GY8410000
ridadr
UN 2811 6.1/PG 3
hs_code
29411090
Toxicity
LD50 i.p. in mice: >200 mg/kg (Haerri)
risk_code
22-25-36/37/38-20/21/22
Signal word
Danger
Symbol(GHS)
GHS06
hazard_code
Xn,T
safety_code
24/25-45-36-26
Storage Class
10 - Combustible liquids
Hazard statements
H301
Autoignition Temperature
301 °C

Chemistry & industry

Pharmacology

MeSH Pharmacological Classification · 4 items

Substances that destroy fungi by suppressing their ability to grow or reproduce. They differ from FUNGICIDES, INDUSTRIAL because they defend against fungi present in human or animal tissues.

Agents used in the prophylaxis or therapy of VIRUS DISEASES. Some of the ways they may act include preventing viral replication by inhibiting viral DNA polymerase; binding to specific cell-surface receptors and inhibiting viral penetration or uncoating; inhibiting viral protein synthesis; or blocking late stages of virus assembly.

Compounds which inhibit the synthesis of proteins. They are usually ANTI-BACTERIAL AGENTS or toxins. Mechanism of the action of inhibition includes the interruption of peptide-chain elongation, the blocking the A site of ribosomes, the misreading of the genetic code or the prevention of the attachment of oligosaccharide side chains to glycoproteins.

Substances that inhibit the growth or reproduction of BACTERIA.

Applications · 5 items

DescriptionBrefeldin A (20350-15-6) is a specific inhibitor of protein translocation from endoplasmic reticulum to Golgi. Induces apoptosis. Brefeldin A activates sphingomyelin metabolism. Cell permeable.

UsesA macrolide isolated from Penicillium brefeldianum. It affects the vesticular transport of the Golgi apparatus and induces DNA fragmentation which leads to apoptosis

UsesBrefeldin A is a potent inhibitor of cell growth first described in 1958, then independently rediscovered by several groups as a potent active in a broad range of bioassays. Brefeldin has antiviral, antibiotic, antifungal, antitumour and herbicidal activity. Early studies on the mode of action of brefeldin identified inhibition of protein and nucleic acid synthesis by disruption of the Golgi apparatus. The precise molecular target is a subset of Sec7-type GTP exchange factors (GEFs) that activate a small GTPase, Arf1p, an integral component of protein trafficking and signalling.

UsesBrefeldin A (BFA) is a natural fungal metabolite which has been used extensively to study intracellular transport by vesicles or endosomes. Early studies demonstrated that BFA reversibly interferes with protein trafficking and secretion mediated by the Golgi apparatus and endoplasmic reticulum. BFA directly and reversibly inhibits Sec7 domain-containing guanine-exchange factors which are necessary for ADP-ribosylation factor activation associated with vesicular transport (IC50 = ~10 μM). BFA is used to study endosomal trafficking and function in cells of plants as well as those of fungi, invertebrates, and vertebrates.

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Compound notes

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On this pageBasic informationOverviewNames & identifiersPropertiesSafety & regulationChemistry & industryRelated reactionsCompound notes
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Water Solubility
Soluble in dimethylsulfoxide, dichloromethane and ethanol. Slightly soluble in water.
Merck
13 · 13,1355
BRN
25191 · 25191
Stability
2 years · Stable for 2 years from date of purchase as supplied. Solutions in DMSO or ethanol may be stored at -20°C for up to 1 month.
InChI
1S/C16H24O4/c1-11-5-3-2-4-6-12-9-13(17)10-14(12)15(18)7-8-16(19)20-11/h4,6-8,11-15,17-18H,2-3,5,9-10H2,1H3/b6-4+,8-7+/t11-,12+,13-,14+,15-/m0/s1
InChIKey
QSECOIOBNZLGOD-OBCVZTHZSA-N
SMILES
O1[C@H](CCC\C=C\[C@H]2[C@H]([C@H](\C=C\C1=O)O)C[C@H](C2)O)C
CAS DataBase Reference
20350 · 20350-15-6
FDA UNII
0 D35F9K6 · XG0D35F9K6
UNSPSC Code
51102829 · 51102829
NACRES
85 · NA.85
Symbol(GHS)
6 · GHS06
Signal word
Danger
Hazard statements
301 · H301
Precautionary statements
301 · P301+P310
Hazard Codes
Xn,T
Risk Statements
22 · 22-25-36/37/38-20/21/22
Safety Statements
24 · 24/25-45-36-26
RIDADR
2811 · UN 2811 6.1/PG 3
WGK Germany
3 · 3
RTECS
8410000 · GY8410000
Autoignition Temperature
301 °C · 301 °C
HS Code
29411090 · 29411090
Storage Class
10 · 10 - Combustible liquids
Toxicity
50 i.p · LD50 i.p. in mice: >200 mg/kg (Haerri)
Precautionary statements
P301+P310

General DescriptionSpecifically and reversibly blocks translocation of proteins from the endoplasmic reticulum (ER) to the Golgi apparatus without affecting endocytosis or lysosome function. Inhibitor of HDL-mediated cholesterol efflux. Causes disassembly of the Golgi complex and ER swelling in a variety of mammalian cell lines at <40 ng/ml. Blocks binding of ADP-ribosylation factor to the Golgi and inhibits the GDP-GTP exchange. Inhibits the activity of BIG1 and BIG2, the guanine-nucleotide exchange proteins for ADP-ribosylation factors. Also available as a 25 mM solution in DMSO (Cat. No. 500583).

Upstream & downstream products

Upstream raw materials

1-Hexanol, 5-(4-methoxyphenoxy)-, (5S)-4H-Cyclopent[f]oxacyclotridecin-4-one, 1,6,7,8,9,11a,12,13,14,14a-decahydro-6-methyl-1,13-bis[(4-nitrobenzoyl)oxy]-, (1R,2E,6S,10E,11aS,13S,14aR)-4H-Cyclopent[f]oxacyclotridecin-4-one, 1,13-bis[[(1,1-dimethylethyl)dimethylsilyl]oxy]-1,6,7,8,9,11a,12,13,14,14a-decahydro-6-methyl-, (1R,2E,6S,10E,11aS,13S,14aR)-

Additional notes

DefinitionChEBI: A metabolite from Penicillium brefeldianum that exhibits a wide range of antibiotic activity.