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Rifamycin B

HCID 5459948
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Basic information

CAS
13929-35-6
Standard SMILES
CO[C@H]1/C=C/O[C@@]2(C)Oc3c(C)c(O)c4c(O)c(cc(OCC(=O)O)c4c3C2=O)NC(=O)/C(C)=C\C=C\[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C
InChIKey
SQTCRTQCPJICLD-KTQDUKAHSA-N
Molecular formula
C39H49NO14
Average molar mass
755.8 g/mol
Monoisotopic mass
755.31530524

Overview

Rifamycin B is a member of rifamycins, a carboxylic acid, an organic heterotetracyclic compound and an acetate ester. It is a conjugate acid of a rifamycin B(2-).

Names & identifiers

Preferred name
Rifamycin B
IUPAC
2-[[(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-13-acetyloxy-2,15,17,29-tetrahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-6,23-dioxo-8,30-dioxa-24-azatetracyclo[23.3.1.14,7.05,28]triaconta-1(29),2,4,9,19,21,25,27-octaen-27-yl]oxy]acetic acid
English name
4-O-(Carboxymethyl)rifamycin
Molecular formula
C39H49NO14
Molecular weight
755.8

Names & synonyms

RIFAMYCIN BNancimycin13929-35-64-O-(Carboxymethyl)rifamycin8DDB535DJICHEBI:17876DTXSID901037384NSC-145604Acetic acid, ((1,2-dihydro-5,6,17,19,21-pentahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-1,11-dioxo-2,7-(epoxypentadeca(1,11,13)trienimino)naphtho(2,1-b)furan-9-yl)-oxy)-, 21-acetate2-(((7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-13-acetyloxy-2,15,17,29-tetrahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-6,23-dioxo-8,30-dioxa-24-azatetracyclo(23.3.1.14,7.05,28)triaconta-1(29),2,4,9,19,21,25,27-octaen-27-yl)oxy)acetic acid2-[[(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-13-acetyloxy-2,15,17,29-tetrahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-6,23-dioxo-8,30-dioxa-24-azatetracyclo[23.3.1.14,7.05,28]triaconta-1(29),2,4,9,19,21,25,27-octaen-27-yl]oxy]acetic acidRefChem:179425
Show more names
C01848NCI-145-604Rifamycin impurity ARifaximin EP Impurity B

Properties

Computed structural properties

XLogP
4.8
Topological polar surface area
228 Ų
Hydrogen bond donors
6
Hydrogen bond acceptors
14
Rotatable bonds
6
Heavy atoms
54
Formal charge
0
Complexity
1,460

Experimental & physicochemical properties

LipidsPolyketides [PK] -> Ansamycins and related polyketides [PK05]

Physicochemical properties

Melting point
300 ° · 300° (dec 160-164°)
alpha
20 · D20 -11° (methanol)
Boiling point
730.16 °C · 730.16°C (rough estimate)
Density
1.2421 · 1.2421 (rough estimate)
refractive index
1.535 · 1.5350 (estimate)
solubility
DMSO (Slightly), Ethyl Acetate (Slightly), Methanol (Slightly, Sonicated)
pka
2.69 · 2.69±0.10(Predicted)
BRN
604953 · 604953
Stability
Unstable in solution
FDA UNII
8 DDB535DJI · 8DDB535DJI
Toxicity
50 in · LD50 in mice (mg/kg): 2040 i.v., >3000 i.p., s.c., and orally (Sensi, 1964)

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

GHS classification

GHS Classification · 4 items

Warning

H319 (100%): Causes serious eye irritation [Warning Serious eye damage/eye irritation]

P264+P265, P280, P305+P351+P338, and P337+P317 (click each P-code to see the statement)

The GHS information provided by 1 company from 1 notification to the ECHA C&L Inventory.

Hazard information

Hazard Classes and CategoriesEye Irrit. 2 (100%)

Safety data

Toxicity
LD50 in mice (mg/kg): 2040 i.v., >3000 i.p., s.c., and orally (Sensi, 1964)

Chemistry & industry

Applications

UsesRifamycin B (Rifaximin EP Impurity B) is a Rifamycin (R508200) derivative as antibacterial agent.

UsesA Rifamycin (R508200) derivative as antibacterial agent.

Additional notes

DefinitionChEBI: Rifamycin B is a carboxylic acid, an acetate ester, an organic heterotetracyclic compound and a member of rifamycins. It is a conjugate acid of a rifamycin B(2-).

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Compound notes

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On this pageBasic informationOverviewNames & identifiersPropertiesSafety & regulationChemistry & industryRelated reactionsCompound notes
Rifamycin EP Impurity A
Rifaximin impurity B (EP)
DTXCID801521425237-697-8NacimycinRifomycin BNCI 145-604C39H49NO14UNII-8DDB535DJIRifamycin B CRS

Database identifiers

CAS
13929-35-6
PubChem CID
5459948
DTXSID
DTXSID901037384
ChEMBL
CHEMBL307649
ChEBI
CHEBI:17876
UNII
8DDB535DJI
EC Number
237-697-8