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Benanomicin B

HCID 5464366
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Basic informationOverviewNames & identifiersPropertiesChemistry & industryRelated reactionsCompound notes
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Basic information

CAS
116249-66-2
Standard SMILES
COc1cc(O)c2c(c1)C(=O)c1c(cc3c(c1O)-c1c(cc(C)c(C(=O)N[C@H](C)C(=O)O)c1O)[C@H](O[C@@H]1O[C@H](C)[C@H](N)[C@H](O[C@@H]4OC[C@@H](O)[C@H](O)[C@H]4O)[C@H]1O)[C@H]3O)C2=O
InChIKey
IHIIRQILYAXIOH-NUVDETJMSA-N
Molecular formula
C39H42N2O18
Average molar mass
826.8 g/mol
Monoisotopic mass
826.24326249

Overview

Pradimicin C is a polyketide, a polyphenol, an aromatic ether, a secondary alcohol, a disaccharide derivative, a pradimicin and a L-alanine derivative. It is functionally related to a D-alanine.

Names & identifiers

Preferred name
Benanomicin B
IUPAC
(2R)-2-[[(5S,6S)-5-[(2S,3R,4S,5S,6R)-5-amino-3-hydroxy-6-methyl-4-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-1,6,9,14-tetrahydroxy-11-methoxy-3-methyl-8,13-dioxo-5,6-dihydrobenzo[a]tetracene-2-carbonyl]amino]propanoic acid
English name
Benanomicin B
Molecular formula
C39H42N2O18
Molecular weight
826.75

Names & synonyms

Benanomicin BPradimicin C116249-66-22AEY6X9QC2CHEBI:8351DTXSID001317618(2R)-2-[[(5S,6S)-5-[(2S,3R,4S,5S,6R)-5-amino-3-hydroxy-6-methyl-4-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-1,6,9,14-tetrahydroxy-11-methoxy-3-methyl-8,13-dioxo-5,6-dihydrobenzo[a]tetracene-2-carbonyl]amino]propanoic acidD-Alanine, N-((5-((4-amino-4,6-dideoxy-3-O-beta-D-xylopyranosyl-beta-D-galactopyranosyl)oxy)-5,6,8,13-tetrahydro-1,6,9,14-tetrahydroxy-11-methoxy-3-methyl-8,13-dioxobenzo(a)naphthacen-2-yl)carbonyl)-(2R)-2-(((5S,6S)-5-((2S,3R,4S,5S,6R)-5-amino-3-hydroxy-6-methyl-4-((2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl)oxyoxan-2-yl)oxy-1,6,9,14-tetrahydroxy-11-methoxy-3-methyl-8,13-dioxo-5,6-dihydrobenzo(a)tetracene-2-carbonyl)amino)propanoic acidRefChem:116945DTXCID5017474242-(((5S,6S)-5-((2S,3R,4S,5S,6R)-5-amino-3-hydroxy-6-methyl-4-((2S,3R,4S,5R)-3,4,5-trihydroxytetrahydropyran-2-yl)oxy-tetrahydropyran-2-yl)oxy-1,6,9,14-tetrahydroxy-11-methoxy-3-methyl-8,13-dioxo-5,6-dihydrobenzo(a)tetracene-2-carbonyl)amino)propanoic acid

Properties

Computed structural properties

XLogP
-2.4
Topological polar surface area
335 Ų
Hydrogen bond donors
11
Hydrogen bond acceptors
19
Rotatable bonds
8
Heavy atoms
59
Formal charge
0
Complexity
1,590

Physicochemical properties

storage temp.
-20 °C · -20°C
solubility
DMSO: Soluble
form
A solid
FDA UNII
2 AEY6X9QC2 · 2AEY6X9QC2

Chemistry & industry

Applications

UsesBenanomicin B (Pradimicin C) is an antifungal antibiotic that also has antibacterial activity against two Gram-positive bacteria: Micrococcus luteus and Corynebacterium bovis[1].

Suppliers2 total

浙江珲达生物科技有限公司0571-89903022 18679456698 · [email protected]
上海一飞生物科技有限公司021-65675885 18964387627 · [email protected]

Additional notes

DefinitionChEBI: A member of the class of pradimicins that is isolated from the cultured broth of Actinomadura hibisca No. P157-2 (ATCC 53557).

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Compound notes

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On this pageBasic informationOverviewNames & identifiersPropertiesChemistry & industryRelated reactionsCompound notes
Show more names
D-Alanine, N-[[(5S,6S)-5-[(4-amino-4,6-dideoxy-3-O-β-D-xylopyranosyl-β-D-galactopyranosyl)oxy]-5,6,8,13-tetrahydro-1,6,9,14-tetrahydroxy-11-methoxy-3-methyl-8,13-dioxobenzo[a]naphthacen-2-yl]carbonyl]-
ANTIBIOTIC BU-3608CBU-3608CUNII-2AEY6X9QC2orb2299256SCHEMBL2228764SCHEMBL29711257C39H42N2O18HY-N15184

Database identifiers

CAS
116249-66-2
PubChem CID
5464366
DTXSID
DTXSID001317618
ChEBI
CHEBI:8351
UNII
2AEY6X9QC2
Nikkaji
J228.009D