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13-Dihydrodaunorubicin

HCID 83845
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Basic information

CAS
28008-55-1
Standard SMILES
COc1cccc2c1C(=O)c1c(O)c3c(c(O)c1C2=O)C[C@@](O)(C(C)O)C[C@@H]3O[C@H]1C[C@H](N)[C@H](O)[C@H](C)O1
InChIKey
HJEZFVLKJYFNQW-FKKRWUELSA-N
Molecular formula
C27H31NO10
Average molar mass
529.5 g/mol
Monoisotopic mass
529.19479619

Overview

13-dihydrodaunorubicin is an aminoglycoside antibiotic that is (1S,3S)-3,5,12-trihydroxy-3-(1-hydroxyethyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene having a 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranosyl residue attached at position 1 via a glycosidic linkage. It is an aminoglycoside antibiotic, a member of p-quinones, a deoxy hexoside, an anthracycline and a monosaccharide derivative. It is a conjugate base of a 13-dihydrodaunorubicin(1+). It derives from a hydride of a tetracene.

Names & identifiers

Preferred name
13-Dihydrodaunorubicin
IUPAC
(7S,9S)-7-[(2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyloxan-2-yl]oxy-6,9,11-trihydroxy-9-(1-hydroxyethyl)-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione
English name
DAUNOMYCINOL
Molecular formula
C27H31NO10
Molecular weight
529.54

Names & synonyms

13-DihydrodaunorubicinCHEBI:31059(7S,9S)-7-[(2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyloxan-2-yl]oxy-6,9,11-trihydroxy-9-(1-hydroxyethyl)-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione(7S,9S)-7-((2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyloxan-2-yl)oxy-6,9,11-trihydroxy-9-(1-hydroxyethyl)-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dioneRefChem:1057466Daunorubicin EP Impurity BDuborimycin(1S,3S)-3,5,12-trihydroxy-3-(1-hydroxyethyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranosideEpirubicin Hydrochloride EP Impurity ESCHEMBL1136412CHEMBL3544589DTXSID20950699
Show more names
daunorubicinol13-dihydrodaunomycinC12430DAUNOMYCINOLleukaemomycinddihydrodaunomycinantibiotic20-798rpDAUNOMYCINOL USP/EP/BP
LMPK13050004V73O8640X8ID183436Q27114110DAUNORUBICIN HYDROCHLORIDE IMPURITY B [EP IMPURITY](8S,10S)-10-(((2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)-6,8,11-trihydroxy-8-(1-hydroxyethyl)-1-methoxy-7,8,9,10-tetrahydrotetracene-5,12-dione(8S,10S)-10-((3-AMINO-2,3,6-TRIDEOXY-.ALPHA.-L-LYXO-HEXOPYRANOSYL)OXY)-6,8,11-TRIHYDROXY-8-((1RS)-1-HYDROXYETHYL)-1-METHOXY-7,8,9,10-TETRAHYDROTETRACENE-5,12-DIONE(8S,10S)-10-((3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranosyl)oxy)-6,8,11-trihydroxy-8-((1rs)-1-hydroxyethyl)-1-methoxy-7,8,9,10-tetrahydrotetracene-5,12-dione

Properties

Computed structural properties

XLogP
1.8
Topological polar surface area
189 Ų
Hydrogen bond donors
6
Hydrogen bond acceptors
11
Rotatable bonds
4
Heavy atoms
38
Formal charge
0
Complexity
918

Experimental & physicochemical properties

LipidsPolyketides [PK] -> Aromatic polyketides [PK13] -> Anthracyclinones [PK1305]

Physicochemical properties

Melting point
173 °C · >173°C (dec.)
Boiling point
609.35 °C · 609.35°C (rough estimate)
Density
1.3345 · 1.3345 (rough estimate)
refractive index
1.64 · 1.6400 (estimate)
storage temp.
-20 °C, · -20°C, Hygroscopic
solubility
DMSO (Slightly), Methanol (Slightly)
pka
7.54 · 7.54±0.60(Predicted)
form
Solid
color
Red to Dark Red
Stability
Hygroscopic
FDA UNII
8 YIP30L · YDU8YIP30L
NCI Drug Dictionary
duborimycin
Symbol(GHS)

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

Safety data

Signal word
Danger
Symbol(GHS)
GHS08,GHS07
Hazard statements
H332-H302-H350-H360-H312-H340
Precautionary statements
P264-P270-P301+P312-P330-P501-P261-P271-P304+P340-P312-P280-P302+P352-P312-P322-P363-P501

Chemistry & industry

Applications

UsesDaunorubicinol is a metabolite of Daunorubicin (D194500, HCl salt).

Additional notes · 1 item

DefinitionChEBI: An aminoglycoside antibiotic that is (1S,3S)-3,5,12-trihydroxy-3-(1-hydroxyethyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene having a 3-amino-2,3,6-trideoxy-alpha-L-lyxo /stereo>-hexopyranosyl residue attached at position 1 via a glycosidic linkage.

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Compound notes

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Database identifiers

CAS
28008-55-1
PubChem CID
83845
DTXSID
DTXSID20950699
ChEMBL
CHEMBL3544589
ChEBI
CHEBI:31059
UNII
V73O8640X8
Nikkaji
J1.288.622E
8 · GHS08,GHS07
Signal word
Danger
Hazard statements
332 · H332-H302-H350-H360-H312-H340
Precautionary statements
264 · P264-P270-P301+P312-P330-P501-P261-P271-P304+P340-P312-P280-P302+P352-P312-P322-P363-P501