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HuagongsheHuagongshe Chemistry Print Report · For research reference only
HCID 97113Generated: October 23, 2026

4-Chloro-2-methylthiopyrimidine

4-CHLORO-2-(METHYLTHIO)PYRIMIDINE · 4-CHLORO-2-METHYLSULFANYL-PYRIMIDINE · PYRIMIDINE, 4-CHLORO-2-(METHYLTHIO)- · 4-Chloro-2-(methylthio)pyrimidine 97% · 4-Chloro-2-(Methylthio)py... · 2-methylthio-4-chloropyrimine · 6-Chloro-2-methylthiopyrimidine · 2-(Methylthio)-4-chloropyrimidine

https://huagongshe.com/en/chemical/97113

4-Chloro-2-methylthiopyrimidine molecular structure

Identifiers & Physical Properties

CAS No.49844-90-8
Molecular formulaC5H5ClN2S
Average molar mass160.63 g/mol
Monoisotopic mass159.98619684 g/mol
SMILESCSc1nccc(Cl)n1
InChIKeyDFOHHQRGDOQMKG-UHFFFAOYSA-N
PubChem CID97113
EC No.256-500-6
DTXSIDDTXSID60198114

Chemical & Physical Properties

XLogP2
Topological polar surface area51.1
Hydrogen bond donors0
Hydrogen bond acceptors3
Rotatable bonds1
Heavy atoms9
Formal charge0
Complexity91
Melting point−2 °C(lit.)
Boiling point139-140 °C36 mm Hg(lit.)
Density1.381 g/mL at 25 °C(lit.)
Refractive indexn20/D 1.6(lit.)
Flash point>230 °F
Storage conditionsunder inert gas (nitrogen or Argon) at 2–8 °C
Physical stateliquid
pKa (acidity coefficient)-0.56±0.20(Predicted)
ColorColorless to Red to Green
SolubilityNot miscible or difficult to mix in water.
SensitivityHygroscopic
BRN118042
InChIInChI=1S/C5H5ClN2S/c1-9-5-7-3-2-4(6)8-5/h2-3H,1H3
InChIKeyDFOHHQRGDOQMKG-UHFFFAOYSA-N
SMILESC1(SC)=NC=CC(Cl)=N1
CAS DataBase Reference49844-90-8(CAS DataBase Reference)
UNSPSC Code12352100
NACRESNA.22
GHS pictogramGHS05
Signal wordDanger
GHS hazard statementsH314
GHS precautionary statementsP280-P303+P361+P353-P304+P340+P310-P305+P351+P338-P363-P405
Personal protective equipment (PPE)Faceshields, Gloves, Goggles, type ABEK (EN14387) respirator filter
Hazard symbolsC
Risk statements (R)34
Safety statements (S)26-36/37/39-45
UN transport numberUN 1760 8/PG 2
Water hazard class (WGK)3
F10-13-23
Hazard NoteCorrosive/Hygroscopic
Hazard class8Skin Corr. 1B
Packing groupIII
Customs code29335990
Storage class8A - Combustible corrosive hazardous materials
Limited quantities1.0 L (0.3 gallons) (liquid) or 1 Kg (2.2 lbs) (solid)
Excepted quantitiesMax Inner Pack (30g or 30ml) and Max Outer Pack (500g or 500ml)

Safety & Regulations

GHS classificationDangerH314 (97.9%): Causes severe skin burns and eye damage [Danger Skin corrosion/irritation]P260, P264, P280, P301+P330+P331, P302+P361+P354, P304+P340, P305+P354+P338, P316, P321, P363, P405, and P501 (click each P-code to see the statement)Aggregated GHS information provided per 48 reports by companies from 6 notifications to the ECHA C&L Inventory.
Hazard Classes and CategoriesSkin Corr. 1B (97.9%)
F10-13-23
Personal protective equipment (PPE)Faceshields, Gloves, Goggles, type ABEK (EN14387) respirator filter
Water hazard class (WGK)3
UN transport numberUN 1760 8/PG 2
Customs code29335990
Risk statements (R)34
Signal wordDanger
GHS pictogramGHS05
Hazard symbolsC
hazard_noteCorrosive/Hygroscopic
Safety statements (S)26-36/37/39-45
Hazard class8Skin Corr. 1B
Storage class8A - Combustible corrosive hazardous materials
Packing groupIII
GHS hazard statementsH314
Limited quantities1.0 L (0.3 gallons) (liquid) or 1 Kg (2.2 lbs) (solid)
Excepted quantitiesMax Inner Pack (30g or 30ml) and Max Outer Pack (500g or 500ml)
GHS precautionary statementsP280-P303+P361+P353-P304+P340+P310-P305+P351+P338-P363-P405

Applications & Uses

Uses

It finds it application as a building block used in medicinal chemistry synthesis. 4-Chloro-2-methylthiopyrimidine is used in the total synthesis of the marine alkaloid variolin B1 and 2-hydroxy-4-pyrimidinecarboxylic acid. It is also used in the synthesis of 2,4-disubstituted pyrimidines, a novel class of KDR kinase inhibitors.

Uses

4-Chloro-2-methylthiopyrimidine was used in the total synthesis of the marine alkaloid variolin B1 and 2-hydroxy-4-pyrimidinecarboxylic acid. It was used in the synthesis of 2,4-disubstituted pyrimidines, a novel class of KDR kinase inhibitors. It was used as building block in medicinal chemistry synthesis.