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Deoxycytidine

HCID 13711
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기본 정보개요이름 및 식별자물성안전 및 규제화학 및 산업관련 반응화합물 노트
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기본 정보

CAS
56905-41-0
표준 SMILES
Nc1ccn([C@H]2C[C@H](O)[C@@H](CO)O2)c(=O)n1
InChIKey
CKTSBUTUHBMZGZ-SHYZEUOFSA-N
분자식
C9H13N3O4
평균 분자량
227.22 g/mol
단동위원소 질량
227.0906059

개요

2'-deoxycytidine is a pyrimidine 2'-deoxyribonucleoside having cytosine as the nucleobase. It has a role as a mouse metabolite, a Saccharomyces cerevisiae metabolite, an Escherichia coli metabolite and a human metabolite. It is functionally related to a cytosine.

이름 및 식별자

우선 이름
Deoxycytidine
IUPAC
4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
영어명
951-77-9
분자식
C9H13N3O4
분자량
227.22

이름 및 동의어

2'-deoxycytidine951-77-9deoxycytidineCYTIDINE, 2'-DEOXY-Deoxyribose cytidinedCYDCytosine deoxyribosideDoxecitineDesoxycytidinCytosine, deoxyribonucleoside4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one0W860991D6
이름 더 보기
CHEBI:15698DTXSID70883620MT-1621 COMPONENT 2'-DEOXYCYTIDINE4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one4-amino-1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl)-1,2-dihydropyrimidin-2-one4-amino-1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl)pyrimidin-2-oneDeoxyriboside, CytosineRefChem:585745

데이터베이스 식별자

CAS
56905-41-0、951-77-9
PubChem CID
13711
DTXSID
DTXSID70883620
ChEMBL
CHEMBL66115
ChEBI
CHEBI:15698
UNII
0W860991D6
EC Number
213-454-1
Nikkaji
J14.406A

물성

구조 계산 물성

XLogP
-1.8
극성 표면적
108 Ų
수소 결합 공여자 수
3
수소 결합 수용자 수
4
회전 가능 결합 수
2
무거운 원자 수
16
형식 전하
0
복잡도
355

실험 및 물리화학적 성질

Chemical ClassesBiological Agents -> Nucleic Acids and Derivatives
DrugsPharmaceuticals -> Listed in ZINC15
LogP-1.77
Solubility870 mg/mL
Human Drugs · 2건

FDA approved drugs -> Active ingredient

FDA approved drugs -> Active ingredient

Melting Point207 - 210 °C
Physical Description · 2건

White powder; [Sigma-Aldrich MSDS]

Solid

Collision Cross Section · 4건

158.41 Ų [M+Na]+ [CCS Type: DT; Method: stepped-field]

146.84 Ų [M-H]- [CCS Type: DT; Method: single field calibrated with Agilent tune mix (Agilent)]

158.5 Ų [M+K]+ [CCS Type: DT; Method: single field calibrated with ESI Low Concentration Tuning Mix (Agilent)]

149.1 Ų [M-H]-

안전 및 규제

안전 정보는 참고용이며, 공급업체의 물질안전보건자료(SDS), 관련 법규 및 전문가 평가를 대체하지 않습니다.

GHS 분류

GHS Classification · 3건

This chemical does not meet GHS hazard criteria for 92.3% (12 of 13) of all reports.

Not Classified

Aggregated GHS information provided per 13 reports by companies from 2 notifications to the ECHA C&L Inventory.

유해성 정보

Hazards SummaryMay cause irritation; [Sigma-Aldrich MSDS]
Hazard Classes and CategoriesNot Classified

화학 및 산업

약리 정보

Protein BindingIn vitro plasma protein binding of doxecitine was less than 10% over the concentration range between 0.23 mcg/mL and 23 mcg/mL.
Pharmacodynamics · 1건

Doxecitine's primary action is a substrate enhancement therapy that corrects the nucleoside imbalance caused by TK2d deficiency. The goal is to provide a high systemic concentration of deoxycytidine and deoxythymidine that can be utilized by unaffected salvage pathways. This action restores the synthesis of mitochondrial DNA (mtDNA) precursors, leading to the restoration of mtDNA copy number and subsequent improvement in respiratory chain enzyme (RCE) activities in affected tissues. This systemic correction counteracts the relentless muscle weakness and respiratory failure characteristic of TK2d, resulting in the amelioration of myopathy, delay of disease onset, and significantly prolonged survival in both preclinical models and patients.

Mechanism of Action · 1건

The progressive, often fatal myopathy seen in Thymidine Kinase 2 deficiency (TK2d) is caused by mutations in the nuclear TK2 gene, leading to a dysfunctional or deficient mitochondrial TK2 enzyme. This enzyme is essential for phosphorylating the pyrimidine nucleosides doxecitine (dC) and thymidine (dT) into dCMP and dTMP, which are precursors for the deoxyribonucleotide triphosphates (dNTPs) required for mitochondrial DNA (mtDNA) maintenance and replication. The resulting metabolic block causes severe mtDNA depletion and dysfunction of the mitochondrial respiratory chain.[] Doxecitine, in combination with doxribtimine, functions as a nucleoside substrate enhancement therapy that successfully bypasses the defective mitochondrial pathway. The high concentrations of exogenous dC and dT are primarily phosphorylated by intact cytosolic salvage enzymes, specifically Deoxycytidine Kinase (dCK) and Thymidine Kinase 1 (TK1). The nucleosides are actively transported into cells and across the blood-brain barrier via equilibrative nucleoside transporters. The resulting phosphorylated dNTP precursors are then made available to the mitochondria. This replenishes the critically depleted dNTP pools, which facilitates the replication of mtDNA by the mitochondrial DNA Polymerase gamma.

Biological Half-LifeThe mean half-life was approximately 1 hour for doxecitine following a single oral administration of 133 mg/kg doxecitine under fed conditions in healthy adult subjects.

관련 반응

25건
반응 기록 만들기
HRID 1725 반응식
HRID 1725반응물로uspto-grants-1998_03
HRID 25468 반응식
HRID 25468반응물로uspto-grants-2005_02
HRID 84065 반응식
HRID 84065반응물로uspto-grants-2014_09
HRID 366970 반응식
HRID 366970반응물로uspto-grants-2000_10
HRID 366972 반응식
HRID 366972반응물로uspto-grants-2000_10
HRID 600111 반응식
HRID 600111반응물로uspto-grants-2011_03
HRID 844537 반응식
HRID 844537생성물로uspto-grants-2002_04
HRID 844538 반응식
HRID 844538생성물로uspto-grants-2002_04
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Metabolism/Metabolites · 1건

Doxecitine is primarily degraded by cytidine deaminase to its nucleobases and the 2-deoxy-α-D-ribose 1-phosphate moiety. Intermediate products of doxecitine catabolism are deoxyuridine, uracil, and dihydrouracil with the end products β-alanine, ammonia, and carbon dioxide (CO2).

Absorption, Distribution and Excretion · 2건

Doxecitine is administered orally, with rapid absorption and plasma concentrations returning to near baseline within 8 to 12 hours. The absolute bioavailability of doxecitine following oral administration has not been determined. The median time to peak plasma concentration (Tmax) was approximately two hours for doxecitine.

Urinary excretion of intact doxecitine and doxribtimine was <1% of the dose in healthy subjects following an oral administration of doxecitine and doxribtimine.

Tissue LocationsAll Tissues
Cellular LocationsExtracellular
Metabolite PathwaysBeta Ureidopropionase Deficiency

용도 및 제조

General Manufacturing InformationCytidine, 2'-deoxy-: ACTIVE