Back
HuagongsheHuagongshe Chemistry Print Report · For research reference only
HRID 1363687Generated: October 28, 2026

3'-O-Allyl-5'-O-(tert-butyldimethylsilyl)-5-iodo-2'-deoxycytidine → Cytidine, 2'-deoxy-5-iodo-3'-O-2-propen-1-yl-

https://huagongshe.com/reaction/1363687

Reaction equation

Participants

RoleNameHCIDCharge
Reactant3'-O-Allyl-5'-O-(tert-butyldimethylsilyl)-5-iodo-2'-deoxycytidineHCID 66684093—
SolventTetrahydrofuranHCID 8028—
SolventTetrabutylammonium FluorideHCID 2724141—
ProductCytidine, 2'-deoxy-5-iodo-3'-O-2-propen-1-yl-HCID 6668379771%

Reaction Steps

To a stirred solution of 19 (601 mg; 1.18 mmol) in anhydrous THF (28 mL), 1 M TBAF in THF solution (1.31 mL; 1.31 mmol) was added and the reaction mixture was stirred at room temperature for 1 h. After evaporation, the residue was dissolved in ethyl acetate (100 mL). The solution was then washed with saturated aqueous NaCl and dried over anhydrous Na2SO4. After evaporation, the residue was purified by flash column chromatography using CH3OH—CH2Cl2 (1:10) as the eluent to afford 20 as white crystals (329 mg; 71% yield): 1H NMR (400 MHz, CD3OD) δ 8.47 (s, 1H, 6-H), 6.15 (dd, J=6.2, 6.7 Hz, 1H, 1′-H), 5.87-5.98 (m, 1H, CH2CH═CH2), 5.26-5.33 (dm, J=17.2 Hz, 1H, one of CH2CH═CH2), 5.14-5.19 (dm, J=10.5 Hz, 1H, one of CH2CH═CH2), 4.18 (m, 1H, 3′-H), 4.08 (m, 1H, 4′-H), 3.98-4.10 (m, 2H, CH2CH═CH2), 3.82 (dd, J=3.2, 13.0 Hz, 1H, one of 5′-H), 3.72 (dd, J=3.3, 13.0 Hz, 1H, one of 5′-H), 2.44-2.51 (ddd, J=3.2, 6.0, 13.6 Hz, 1H, one of 2′-H), 2.07-2.15 (m, 1H, one of 2′-H); 13C NMR (100 MHz, CD3OD) δ 165.4, 156.9, 148.8, 135.6, 117.0, 87.9, 86.9, 79.6, 71.2, 62.7, 57.2, 39.7; HRMS (FAB+) calcd for C32H37O4N3I (M+H+): 394.0264, found: 394.0274.

Provenance & Evidence

DOI10.6084/m9.figshare.5104873.v1
Patent numberUS07883869B2
Source datasetuspto-grants-2011_02
ORD IDord-fdeb8748ebd14906a192f8f666eaf571
Source noteuspto-grants-2011_02