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HuagongsheHuagongshe Chemistry Print Report · For research reference only
HRID 586766Generated: October 26, 2026

Water → N-Benzoyl-5'-O-(4,4'-dimethoxytrityl)-2'-deoxycytidine

https://huagongshe.com/reaction/586766

Reaction equation

Participants

RoleNameHCIDCharge
ReactantWaterHCID 962—
ReactantN4-Benzoyl-2'-deoxycytidineHCID 9797617—
ReactantN4-Benzoyl-3'-O-(4,4'-dimethoxytrityl)-2'-deoxycytidineHCID 15403758—
ReactantN4-benzoyl-3',5'-O-bis(4,4'-dimethoxytrityl)-2'-deoxycytidineHCID 86590472—
SolventAcetonitrileHCID 6342—
ProductN-Benzoyl-5'-O-(4,4'-dimethoxytrityl)-2'-deoxycytidineHCID 2724490—

Reaction Steps

Referring to PCT Publication No. WO00/75154, the non-hydrated N4-benzoyl-5′-O-(4, 4′-dimethoxytrityl)-2′-deoxycytidine (2.00 g), including N4-benzoyl-2′-deoxycytidine, N4-benzoyl-3′-O-(4, 4′-dimethoxytrityl)-2′-deoxycytidine, and N4-benzoyl-3′, 5′-O-bis(4, 4′-dimethoxytrityl)-2′-deoxycytidine with rates by peak areas of 1.0%, 0.15%, and 2.2%, respectively, was dissolved in acetonitrile (2.3 mL). The solution was added dropwise to water (41 mL) with vigorous stirring and the resultant mixture was stirred for one hour. A white precipitate was recovered by filtration, was washed twice with water and was dried at 50° C. in a vacuum to yield N4-benzoyl-5′-O-(4, 4′-dimethoxytrityl)-2′-deoxycytidine (1.82 g). The XRD pattern and the DSC thermogram showed neither an absorption peak nor an endothermic peak due to the crystallization, which indicates the resultant components was not crystallized. Moreover, the component contained N4-benzoyl-2′-deoxycytidine, N4-benzoyl-3′-O-(4, 4′-dimethoxytrityl)-2′-deoxycytidine, and N4-benzoyl-3′, 5′-O-bis(4, 4′-dimethoxytrityl)-2′-deoxycytidine and the respective peak areas were 0.9%, 0.13%, and 1.8%, respectively, which indicates that the above procedure had no substantial effect on the purification.

Provenance & Evidence

DOI10.6084/m9.figshare.5104873.v1
Patent numberUS06936709B2
Source datasetuspto-grants-2005_08
ORD IDord-e9eafc1f87a845769be475d43c95b20e
Source noteuspto-grants-2005_08