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HuagongsheHuagongshe Chemistry Print Report · For research reference only
HRID 844537Generated: October 26, 2026

Chlorotrimethylsilane → Deoxycytidine

https://huagongshe.com/reaction/844537

Reaction equation

Participants

RoleNameHCIDCharge
ReactantChlorotrimethylsilaneHCID 6397—
ReactantThionyl ChlorideHCID 24386—
ReactantDeoxycytidine hydrochlorideHCID 107488—
ReactantEthanol, 2-methoxy-, benzoateHCID 85839854—
ReactantBenzoyl chloride;2-methoxyethanolHCID 131723206—
SolventPyridineHCID 1049—
ProductDeoxycytidineHCID 1371182.4%

Reaction Conditions

Temperature0 °C

Reaction Steps

2′-deoxycytidine monohydrochloride (13.18 g, 52 mmol) that had been subjected to azeotropic dehydration with pyridine (2×20 ml) under an argon gas stream was suspended in anhydrous pyridine (120 ml) and cooled to 0° C. Chlorotrimethylsilane (19.0 ml, 150 mmol) was added and the mixture was stirred for 15 minutes. The benzoyl chloride-monomethoxypolyethylene glycol; CH3O(CH2CH2O)kC6H4COCl {34.9 mmol, mPEG portion Mn=350; 1H-NMR (400 MHz, CDCl3, TMS) δ68.07 (d, J=8.8Hz,2H,ArH), 6.99 (d, J=8.8 Hz,2H,ArH), 4.23 (t, J=4.8 Hz,2H,ArOCH2), 3.89 (t, J=4.8 Hz,2H,OCH2), 3.79-3.51 (m), 3.38(s,3H,OCH3) ppm} prepared by the reaction of benzoic acid-monomethoxypolyethylene glycol (C. J. van Staveren, et al., J. Am. Chem. Soc., 110, 4994 (1988)) with thionyl chloride, was dissolved in anhydrous pyridine (80 ml) under an argon gas stream, and was added to the previously prepared reaction solution and stirred at room temperature for 2 hours. After cooling to 0° C., distilled water ((10 ml) was added to the reaction mixture , and after concentration to approximately 1/2, concentrated ammonium hydroxide (20 ml) was added at 0° C. and the mixture was stirred for 20 minutes. The solvent was removed under reduced pressure, a saturated sodium bicarbonate aqueous solution (200 ml) was added, and extraction was performed with chloroform (3×100 ml). The organic layer was washed with water a (2×200 ml) and dried over anhydrous sodium sulfate. After filtration, the filtrate was condensed under reduced pressure and the residue was purified by silica gel column chromatography (chloroform/methanol=100/5) to obtain the target PEG-modified 2′-deoxycytidine represented by the formula (3′-1) (18.85 g, 82.4% yield). The 1H-NMR of the obtained compound (400 MHz, CDCl3, TMS) was δ=9.30 (brs,1H,NH), 8.41 (d, J=7.2 Hz,1H,H6), 7.83 (d, J=7.6 Hz,2H,ArH), 7.48 (br,1H,H5), 6.92 (d, J=7.6 Hz,2H,ArH), 6.29-6.10 (m,1H,H1′), 5.07 (brs,1H), 4.74-4.40 (br,2H), 4.27-4.00 (m,3H), 4.00-3.42 (m), 3.36 (s,3H,OCH3), 2.70-2.50 (m,1H,H2″), 2.35-2.18 (m,1H,H2′) ppm.

Provenance & Evidence

DOI10.6084/m9.figshare.5104873.v1
Patent numberUS06380378B1
Source datasetuspto-grants-2002_04
ORD IDord-e4a7d50e4eea41f1acf68351e0ec1ac7
Source noteuspto-grants-2002_04