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4-Amino-1-pentofuranosyl-2(1H)-pyrimidinone

HCID 596
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Basic informationOverviewNames & identifiersPropertiesSafety & regulationChemistry & industryRelated reactionsCompound notes
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Basic information

CAS
147-94-4
Standard SMILES
Nc1ccn(C2OC(CO)C(O)C2O)c(=O)n1
InChIKey
UHDGCWIWMRVCDJ-UHFFFAOYSA-N
Molecular formula
C9H13N3O5
Average molar mass
243.22 g/mol
Monoisotopic mass
243.08552052

Overview

1-β-D-Arabinofuranosylcytosine has been reported in Fritillaria taipaiensis, Fritillaria walujewii, and other organisms with data available.

Names & identifiers

Preferred name
4-Amino-1-pentofuranosyl-2(1H)-pyrimidinone
IUPAC
4-amino-1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
English name
Cytarabine
Molecular formula
C9H13N3O5
Molecular weight
243.22

Names & synonyms

688007-26-3RefChem:10702274-amino-1-pentofuranosyl-2(1h)-pyrimidinone[5',5''-2H2]cytidine478511-21-6[2'-13C]CYTIDINE.beta.-Arabinosylcytosine.beta.-Cytosine arabinoside.beta.-D-ArabinosylcytosineCytosine-.beta.-arabinoside1.beta.-D-ArabinosylcytosineMLS003389283
Show more names
CYTOSINE ARABINOSIDEcytarabin4-AMino-1-((2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxyMethyl)tetrahydrofuran-2-yl)pyriMidin-2(1H)-oneDepoCytecytosar-uCytarabine for Injection1-β-D-ArabinofuranosylcytosineARA-CIretinCS-193
Cytosine, .beta.-D-arabinoside1.beta.-Arabinofuranasylcytosine1.beta.-D-ArabinofuranosylcytosineCytosine, 1-.beta.-D-arabinosyl-Cytosine-.beta.-D-arabinofuranoside1-.beta.-D-ArabinofaranosylcytosineCylocideCytosine, 1-.beta.-D-arabinofuranosyl-

Database identifiers

Properties

Computed structural propertiesFilling in

XLogP
-2.1
Topological polar surface area
129 Ų
Hydrogen bond donors
4
Hydrogen bond acceptors
5
Rotatable bonds
2
Heavy atoms
17
Formal charge
0
Complexity
383

Experimental & physicochemical properties

DrugsPharmaceuticals

Physicochemical properties

Melting point
214 °C · 214 °C
alpha
24 · D24 +153° (c = 0.5 in water)
Boiling point
386.09 °C · 386.09°C (rough estimate)
Density
1.3686 · 1.3686 (rough estimate)
refractive index
1.51 · 1.5100 (estimate)
storage temp.
2 · 2-8°C
solubility
2 O: · H2O: 50 mg/mL, clear, colorless
form
crystalline
pka
4.3 · pKa 4.3 (Uncertain)
color
Prisms from EtOH (aq)
Water Solubility
almost transparency
λmax
272 nm · 272nm(H2O)(lit.)
Merck
14 · 14,2784

Safety & regulation

Safety information is for reference only and does not replace the supplier’s Safety Data Sheet (SDS), applicable regulations, or professional assessment.

Safety data

F
10-23
PPE
Eyeshields, Faceshields, Gloves, type P3 (EN 143) respirator cartridges
wgk
3
rtecs
HA5425000
hs_code
29349990
Toxicity
LD50 oral in rat: > 5gm/kg
risk_code
43-63-36/37/38-20/21/22
Signal word
Warning
Symbol(GHS)
GHS07,GHS08
hazard_code
Xn,Xi
safety_code
36/37-37/39-36-26
Storage Class
11 - Combustible Solids
Hazard statements
H317-H361fd
Hazard Classifications
Repr. 2Skin Sens. 1
Precautionary statements
P202-P261-P272-P280-P302+P352-P308+P313
Hazardous Substances Data
147-94-4(Hazardous Substances Data)

Chemistry & industry

Applications · 7 items

DescriptionCytarabine (147-94-4) is a nucleoside analog that interferes with DNA synthesis and transcription, particularly in tumor cells.1,2 Cellular enzymes convert it to its nucleotide form, Ara-CTP, which disrupts DNA and RNA synthesis when polymerases attempt to incorporate it.3,4 For the same reasons, it is also employed as an antiviral.5 It inhibits proliferation of a variety of leukemic cell lines (IC50s 16-72 nM), but is used primarily against acute myeloid leukemia (AML).6

UsesUsed as an antineoplastic and antiviral. A selective inhibitro of DNA synthesis. Does not inhibit RNA synthesis

Usesantineoplastic, antiviral, antimetabolite

UsesCytarabine USP (Cytosar)is used to treat Acute granulocytic leukemia (adults); acute lymphocytic leukemia (children); Hodgkin’s disease

General DescriptionCytarabine is a pyrimidine nucleoside drug that is related toidoxuridine. This agent is primarily used as an anticanceragent for Burkitt lymphoma and myeloid and lymphaticleukemias. Cytarabine blocks the cellular utilization of deoxycytidine,hence inhibiting the replication of viral DNA.Before it becomes active, the drug is converted to monophosphates,diphosphates, and triphosphates, which block DNApolymerase and the C-2 reductase that converts cytidinediphosphate into the deoxy derivative. The antiviral use of cytarabine is in the treatment of herpeszoster (shingles), herpetic keratitis, and viral infectionsthat resist idoxuridine. Cytarabine is usually administeredtopically. Toxicity occurs on bone marrow, the gastrointestinal(GI) tract, and the kidneys.

General DescriptionThe drug is available in 100-, 500-, 1,000-, and 2,000-mgmultidose vials for IV use. Cytarabine is used in the treatmentof acute myelogenous leukemia and CML. This drugis a deoxycytidine analog originally isolated from thesponge Cryptothethya crypta. It is active following intracellularactivation to the nucleotide metabolite ara-CTP. Theresulting ara-CTP is incorporated into DNA resulting inchain termination and inhibition of DNA synthesis andfunction. Resistance can occur because of decreased activationor transport and increased catabolic breakdown.Metabolic breakdown within the GI tract leads to poorbioavailability. The drug distributes rapidly into tissues andtotal body water with cerebrospinal fluid (CSF) levelsreaching 20% to 40% of those in plasma. Cytidine deaminaseis the primary catabolic enzyme involved in the inactivationof cytarabine. Drug interactions include antagonismof the effects of gentamicin, decreasing the oral bioavailabilityof digoxin, as well as enhancing the cytotoxicity ofvarious alkylating agents, cisplatin, and ionizing radiation.Toxicities include myelosuppression, leukopenia andthrombocytopenia, nausea and vomiting anorexia, diarrhea,and mucositis. Neurotoxicity is usually expressed as ataxia,lethargy, and confusion. An allergic reaction often describedin pediatric patients includes fever, myalgia, malaise, bonepain, skin rash, conjunctivitis, and chest pain.Pretreatment with methotrexate enhances the formation ofara-CTP metabolites resulting in enhanced cytotoxicity.

Related reactions

21 records
New reaction record
HRID 102090 reaction equation
HRID 102090As reactantTraining data from https://doi.org/10.1039/C8SC04228D (2/10)
HRID 116020 reaction equation
HRID 116020As productTraining data from https://doi.org/10.1039/C8SC04228D (2/10)
HRID 134833 reaction equation
HRID 134833As reactantTraining data from https://doi.org/10.1039/C8SC04228D (9/10)
HRID 173475 reaction equation
HRID 173475As productTraining data from https://doi.org/10.1039/C8SC04228D (9/10)
HRID 195408 reaction equation
HRID 195408As reactantTraining data from https://doi.org/10.1039/C8SC04228D (6/10)
HRID 287720 reaction equation
HRID 287720As reactantTraining data from https://doi.org/10.1039/C8SC04228D (8/10)
HRID 304741 reaction equation
HRID 304741As reactantTraining data from https://doi.org/10.1039/C8SC04228D (8/10)
HRID 687307 reaction equation
HRID 687307As reactantTraining data from https://doi.org/10.1039/C8SC04228D (3/10)
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Compound notes

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On this pageBasic informationOverviewNames & identifiersPropertiesSafety & regulationChemistry & industryRelated reactionsCompound notes
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CAS
147-94-4、65-46-3、688007-26-3、7428-39-9
PubChem CID
596
DTXSID
DTXSID80859078
ChEMBL
CHEMBL78
BRN
89175 · 89175
Stability
1 year · Stable for 1 year as supplied from date of purchase. Solutions in DMSO or water may be stored at -20°C for up to 1 month.
InChI
1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7+,8-/m1/s1
InChIKey
UHDGCWIWMRVCDJ-STUHELBRSA-N
SMILES
NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@@H]2O
LogP
-1.808 · -1.808 (est)
CAS DataBase Reference
147 · 147-94-4(CAS DataBase Reference)
NCI Dictionary of Cancer Terms
cytarabine
FDA UNII
4079 A1RDZ · 04079A1RDZ
NCI Drug Dictionary
cytarabine
ATC code
1 BC01 · L01BC01
Proposition 65 List
Cytarabine
EPA Substance Registry System
Cytarabine (147-94-4)
UNSPSC Code
41116107 · 41116107
NACRES
77 · NA.77
Protein binding
13 % · 13%
Excreted unchanged in urine
5.8 · 5.8-10%
Volume of distribution
2.6 · 2.6(L/kg)
Biological half-life
1 · 1-3 (Intrathecal liposomal: 100-263) / Unchanged
Symbol(GHS)
7 · GHS07,GHS08
Signal word
Warning
Hazard statements
317 · H317-H361fd
Precautionary statements
202 · P202-P261-P272-P280-P302+P352-P308+P313
PPE
3 · Eyeshields, Faceshields, Gloves, type P3 (EN 143) respirator cartridges
Hazard Codes
Xn,Xi
Risk Statements
43 · 43-63-36/37/38-20/21/22
Safety Statements
36 · 36/37-37/39-36-26
WGK Germany
3 · 3
RTECS
5425000 · HA5425000
F
10 · 10-23
HS Code
29349990 · 29349990
Storage Class
11 · 11 - Combustible Solids
Hazard Classifications
2 Skin · Repr. 2Skin Sens. 1
Hazardous Substances Data
147 · 147-94-4(Hazardous Substances Data)
Toxicity
50 oral · LD50 oral in rat: > 5gm/kg

General DescriptionColorless crystals. Used as an antiviral agent.

Upstream & downstream products

Upstream raw materials

Ammonia

Downstream products

1-beta-D-Arabinofuranosylcytosine hydrochloride1-arabinofuranosylcytosine-5'-stearylphosphate

Additional notes

DefinitionChEBI: A pyrimidine nucleoside in which cytosine is attached to D-arabinofuranose via a beta-N1-glycosidic bond.