Sodium Chloride → 5'-Thymidylic acid

HRID 1604707Notes

Reaction equation

HRID 1604707 reaction equation
C(O)C(N)(CO)CO.Cl.[Mg+2].[Cl-].[Cl-].[Na+].[Cl-].[OH:15][P:16](=[O:43])([O:26][CH2:27][C@H:28]1[O:42][C@@H:32]([N:33]2[CH:39]=[C:37]([CH3:38])[C:36](=[O:40])[NH:35][C:34]2=[O:41])[CH2:31][C@@H:29]1[OH:30])[O:17]P(=O)(OP(=O)(O)O)O>>[CH3:38][C:37]1[C:36](=[O:40])[NH:35][C:34](=[O:41])[N:33]([C@@H:32]2[O:42][C@H:28]([CH2:27][O:26][P:16]([OH:17])([OH:43])=[O:15])[C@@H:29]([OH:30])[CH2:31]2)[CH:39]=1

Participants

5

Procedure

To 300 ug of a solution comprising 10 mM Tris-HCl (pH 7.5), 6 mM MgCl2 and 10 mM NaCl, there was added 400 ug of pCDV1 [Okayama & Berg: Mol. Cell. Biol., 3, 280 (1983)] and, after further addition of 500 units of KpnI, the reaction was carried out at 37° C. for 6 hours, whereby the plasmid was cleaved at the KpnI site. The DNA recovered byphenol-chloroform extraction followed by ethanol precipitation. About 200 ug of the KpnI-cleaved DNA was added to 200 ul of a solution prepared by adding dTTP in a concentration of 0.25 mM to TdT buffer and, after further addition of 81 units of TdT (P-L Biochemicals). the reaction was carried out at 37° C. for 11 minutes, whereby a poly(dT) chain (about 67 dT residues) was added to each 3 ' end of the KpnI cleavage site of pCDVl. About 100 ug of the poly (dT) chain tailed pCDVl DNA was recovered from the solution by ethanol precipitation following phenol-chloroform extraction. The DNA was added to 1.50 ul of a solution comprising 0 mM Tris-HCl (pH 7.5), 6 M MgCl2 and 100 mM NaCl and, after further addition of 360 units of EcoRI, the reaction was carried out at 37° C. for 2 hours. The reaction mixture was treated by the LGT method, and a DNA fragment of about 3.1 kb was recovered. About 60 ug of the poly(dT) chain-tailed pCDVl was thus obtained. The DNA was dissolved in 500 ul of a solution comprising 10 mM Tris-HCl (pH 8.0) and 1 mM EDTA. the solution was incubated at 65° C. for 5 minutes and then cooled with ice, and 50 ul of 5 M NaCl was added. The mixture was subjected to oligo(dA)-cellulose column (Collaborative Research) chromatography. Molecules having a sufficient poly(dT) chain length were adsorbed on he column and they were eluted with a solution comprising 10 mM Tris-HCl (pH 8.0) and 1 mM EDTA to give 27 ug of the poly(dT) chain-tailed pCDVl (hereinafter referred to as vector primer).

Workup

  1. additionwas added 400 ug of pCDV1 [Okayama & Berg: Mol. Cell. Biol., 3, 280 (1983)]
  2. customThe DNA recovered
  3. extractionbyphenol-chloroform extraction
  4. customfollowed by ethanol precipitation
  5. additionAbout 200 ug of the KpnI-cleaved DNA was added to 200 ul of a solution
  6. customprepared
  7. waitthe reaction was carried out at 37° C. for 11 minutes
  8. additionwhereby a poly(dT) chain (about 67 dT residues) was added to each 3 ' end of the KpnI cleavage site of pCDVl
  9. customwas recovered from the solution by ethanol precipitation
  10. extractionphenol-chloroform extraction
  11. additionThe DNA was added to 1.50 ul of a solution
  12. additionafter further addition of 360 units of EcoRI
  13. waitthe reaction was carried out at 37° C. for 2 hours
  14. additionThe reaction mixture was treated by the LGT method
  15. customa DNA fragment of about 3.1 kb was recovered

Sources & evidence

ORD record
ord-1d6b92954c274830acc43abce1af7c63
Source dataset
uspto-grants-1999_11
Patent number
US05994518

Reaction notes

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