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Cytidine → 2'-O-Methylcytidine

HRID 341933
Notes
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Reaction equation

HRID 341933 reaction equation
[C@@H:1]1([N:10]2[CH:17]=[CH:16][C:14]([NH2:15])=[N:13][C:11]2=[O:12])[O:9][C@H:6]([CH2:7][OH:8])[C@@H:4]([OH:5])[C@H:2]1[OH:3].[H-].[Na+].[CH3:20]I>CN(C)C=O>[CH3:20][O:3][C@@H:2]1[C@H:4]([OH:5])[C@@H:6]([CH2:7][OH:8])[O:9][C@H:1]1[N:10]1[CH:17]=[CH:16][C:14]([NH2:15])=[N:13][C:11]1=[O:12]
ParticipantsConditionsProcedureWorkupSources & evidenceReaction notes

Participants

5

Reactant 3

HCID 6175CytidineHCID 6328Methyl iodideHCID 24758Sodium hydride

Product 1

HCID 1509712'-O-MethylcytidineYield 14.4%

Reagents, catalysts & solvents 1

HCID 6228DimethylformamideSolvent2×

Conditions

Temperature
0 °C

Procedure

Cytidine (100 g, 0.41 mol) was dissolved in warm dimethylformamide (65° C., 1125 mL). The solution was cooled with stirring to 0° C. A slow, steady stream of nitrogen gas was delivered throughout the reaction. Sodium hydride (60% in oil, washed thrice with hexanes, 18 g, 0.45 mol) was added and the mixture was stirred at 0° C. for 45 min. A solution of methyl iodide (92.25 g, 40.5 mL, 0.65 mol) in dimethylformamide (400 mL) was added in portions over 4 h at 0° C. The mixture was stirred for 7 h at 25° C. and then filtered. The filtrate was concentrated to dryness under reduced pressure followed by co-evaporation with methanol (2×200 mL). The residue was dissolved in methanol (350 mL). The solution was adsorbed on silica gel (175 g) and evaporated to dryness. The mixture was slurried in dichloromethane (500 mL) and applied on top of a silica gel column (1 kg). The column was eluted with a gradient of dichloromethane-methanol (10:1→2:1). The less polar 2',3'-dimethyl side product was removed and the co-eluting 2' and 3'-O-methyl product containing fractions were combined and evaporated under reduced pressure to a syrup. The syrup was dissolved in a minimum of hot ethanol (ca. 150 mL) and allowed to cool to 25° C. The resulting precipitate (2' less soluble) was collected, washed with ethanol (2×25 ml) and dried to give 15.2 g of pure 2'-O-methylcytidine; mp 252°-254° C. mp 252°-254° C.); TLC homogenous (RF 0.50, dichloromethanemethanol 3:1, (Rf of 3' isomer 0.50 and the dimethyl product 0.80). The filtrate was evaporated to give 18 g of a mixture of isomers and sodium iodide.

Workup

  1. temperatureThe solution was cooled
  2. customA slow, steady stream of nitrogen gas was delivered throughout the reaction
  3. stirringthe mixture was stirred at 0° C. for 45 min
  4. stirringThe mixture was stirred for 7 h at 25° C.
  5. filtrationfiltered
  6. concentrationThe filtrate was concentrated to dryness under reduced pressure
  7. dissolutionThe residue was dissolved in methanol (350 mL)
  8. customevaporated to dryness
  9. washThe column was eluted with a gradient of dichloromethane-methanol (10:1→2:1)
  10. customThe less polar 2',3'-dimethyl side product was removed
  11. additionthe co-eluting 2' and 3'-O-methyl product containing fractions
  12. customevaporated under reduced pressure to a syrup
  13. dissolutionThe syrup was dissolved in a minimum of hot ethanol (ca. 150 mL)
  14. temperatureto cool to 25° C
  15. customThe resulting precipitate (2' less soluble) was collected
  16. washwashed with ethanol (2×25 ml)
  17. customdried

Sources & evidence

ORD record
ord-86e2521c053c4ee583afa99e4352f794
Source dataset
uspto-grants-1999_01
DOI
10.6084/m9.figshare.5104873.v1
Patent number
US05856466

Reaction notes

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On this pageParticipantsConditionsProcedureWorkupSources & evidenceReaction notes