Sodium Chloride → 5'-Thymidylic acid

HRID 249415

Reaction equation

HRID 249415 reaction equation
C(O)C(N)(CO)CO.Cl.[Mg+2].[Cl-].[Cl-].[Na+].[Cl-].[OH:15][P:16](=[O:43])([O:26][CH2:27][C@H:28]1[O:42][C@@H:32]([N:33]2[CH:39]=[C:37]([CH3:38])[C:36](=[O:40])[NH:35][C:34]2=[O:41])[CH2:31][C@@H:29]1[OH:30])[O:17]P(=O)(OP(=O)(O)O)O.[As](C)(C)(=O)[O-].[Na+].[Cl-].[Cl-].[Ca+2].SC[C@H]([C@@H](CS)O)O>>[CH3:38][C:37]1[C:36](=[O:40])[NH:35][C:34](=[O:41])[N:33]([C@@H:32]2[O:42][C@H:28]([CH2:27][O:26][P:16]([OH:17])([OH:43])=[O:15])[C@@H:29]([OH:30])[CH2:31]2)[CH:39]=1

Participants

8

Procedure

To 300 μl of a solution comprising 10 mM Tris-HCl (pH 7.5), 6 mM MgCl2 and 10 mM NaCl, there was added 400 μg of pCDV1 [Okayama & Berg: Mol. Cell. Biol., 3, 280 (1983)] and, after further addition of 500 units of KpnI, the reaction was carried out at 37° C. for 6 hours, whereby the plasmid was cleaved at the KpnI site. The DNA was recovered by phenol-chloroform extraction and ethanol precipitation. About 200 μg of the KpnI-cleaved DNA was added to 200 μl of a solution prepared by adding dTTP in a concentration of 0.25 mM to a buffer (hereinafter abbreviated as TdT buffer) comprising 40 mM sodium cacodylate, 30 mM Tris-HCl (pH 6.8), 1 mM CaCl2 and 0.1 mM dithiothreitol (hereinafter abbreviated as DTT) and, after further addition of 81 units of terminal deoxynucleotidyl transferase (hereinafter abbreviated as TdT) (P-L Biochemicals), the reaction was carried out at 37° C. for 11 minutes, whereby a poly(dT}chain comprising about 67 dT residues was added to each KpnI cleavage site 3' end of pCDV1. About 100 μg of the poly(dT) chain-added pCDV1 DNA was recovered from the above reaction mixture by phenol-chloroform extraction and ethanol precipitation. The DNA was added to 150 μl of a buffer comprising 10 mM Tris-HCl (pH 7.5), 6 mM MgCl2 and 100 mM NaCl, 360 units of EcoRI was further added, and the reaction was carried out at 37° C. for 2 hours. The reaction mixture was treated by the LGT method, and a DNA fragment of about 3.1 kb was recovered. Thus was obtained about 60 μg of the poly(dT) chain-tailed pCDV1. The DNA was dissolved in 500 μl of a solution comprising 10 mM Tris-HCl (pH 8.0) and 1 mM EDTA, the solution was incubated at 65° C. for 5 minutes and then cooled with ice, and 50 μl of 5M NaCl was added. The mixture was subjected to oligo(dA)-cellulose column (Collaborative Research) chromatography. Molecules having a sufficient poly(dT) chain length were adsorbed on the column and they were eluted with a solution comprising 10 mM Tris-HCl (pH 8.0) and 1 mM EDTA. Thus was obtained 27 μg of the poly(dT) chain-tailed pCDV1 (hereinafter abbreviated as vector primer).

Workup

  1. additionwas added 400 μg of pCDV1 [Okayama & Berg: Mol. Cell. Biol., 3, 280 (1983)]
  2. customThe DNA was recovered by phenol-chloroform extraction and ethanol precipitation
  3. additionAbout 200 μg of the KpnI-cleaved DNA was added to 200 μl of a solution
  4. customprepared
  5. waitthe reaction was carried out at 37° C. for 11 minutes
  6. additionwhereby a poly(dT}chain comprising about 67 dT residues was added to each KpnI cleavage site 3' end of pCDV1
  7. customAbout 100 μg of the poly(dT) chain-added pCDV1 DNA was recovered from the above reaction mixture by phenol-chloroform extraction and ethanol precipitation
  8. additionThe DNA was added to 150 μl of
  9. additionwas further added
  10. waitthe reaction was carried out at 37° C. for 2 hours
  11. additionThe reaction mixture was treated by the LGT method
  12. customa DNA fragment of about 3.1 kb was recovered

Sources & evidence

ORD record
ord-aa49e857a5b84c7fbe393145e398a79e
Source dataset
uspto-grants-1993_05
Patent number
US05214132

Linked notes

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