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Trifluoroacetic acid → N-(3,5-Dibromopyrazin-2-yl)-2-methyl-2-(2-(tetrahydro-2H-pyran-4-yl)ethylamino)propanamide trifluoroacetate

HRID 717124
Notes
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Reaction equation

HRID 717124 reaction equation
[C:1]([OH:7])([C:3]([F:6])([F:5])[F:4])=[O:2].[Br:8][C:9]1[C:10]([NH:16][C:17](=[O:29])[C:18]([NH:21][C:22](=O)OC(C)(C)C)([CH3:20])[CH3:19])=[N:11][CH:12]=[C:13]([Br:15])[N:14]=1.S([O-])([O-])(=O)=O.[Na+].[Na+].[O:37]1[CH2:42][CH2:41][CH:40]([CH2:43]C=O)[CH2:39][CH2:38]1.C(O[BH-](OC(=O)C)OC(=O)C)(=O)C.[Na+]>ClCCl.CO.ClCCCl>[F:4][C:3]([F:6])([F:5])[C:1]([OH:7])=[O:2].[Br:8][C:9]1[C:10]([NH:16][C:17](=[O:29])[C:18]([CH3:19])([NH:21][CH2:22][CH2:43][CH:40]2[CH2:41][CH2:42][O:37][CH2:38][CH2:39]2)[CH3:20])=[N:11][CH:12]=[C:13]([Br:15])[N:14]=1
ParticipantsProcedureWorkupSources & evidenceReaction notes

Participants

9

Reactant 5

HCID 6422Trifluoroacetic acidHCID 24436Sodium Sulfate2×HCID 5049666Sodium triacetoxyborohydride3×HCID 177509432-(Oxan-4-yl)acetaldehyde2×HCID 86696610tert-Butyl 1-(3,5-dibromopyrazin-2-ylamino)-2-methyl-1-oxopropan-2-ylcarbamate

Product 1

HCID 86696611
N-(3,5-Dibromopyrazin-2-yl)-2-methyl-2-(2-(tetrahydro-2H-pyran-4-yl)ethylamino)propanamide trifluoroacetate
Yield 83.3%

Reagents, catalysts & solvents 3

HCID 111,2-DichloroethaneSolventHCID 887MethanolSolventHCID 6344DichloromethaneSolvent

Procedure

TFA (3.66 mL, 47.5 mmol) was added to a stirred mixture of tert-butyl 1-(3,5-dibromopyrazin-2-ylamino)-2-methyl-1-oxopropan-2-ylcarbamate (1.04 g, 2.374 mmol) in dichloromethane (20 mL). The resulting clear yellow solution was stirred at room temperature for 3 h. All volatiles were removed under reduced pressure and the residue dried under high vacuum to give a yellow semi-solid. MS (ESI) m/z 339.1 [M+1]+. Sodium sulfate (1.686 g, 11.87 mmol) was added followed by 2-(tetrahydro-2H-pyran-4-yl)acetaldehyde (0.396 g, 3.09 mmol) and 1,2-dichloroethane (20 mL). The resulting mixture was stirred vigorously and heated at 80° C. under a reflux condenser under nitrogen for 2.5 h. More 2-(tetrahydro-2H-pyran-4-yl)acetaldehyde (0.100 g, 0.780 mmol) and sodium sulfate (1.00 g, 7.04 mmol) were added and heating at 80° C. continued for another 2 h. The resulting yellow solution was removed by pipette from the solid sodium sulfate into a dry 250 mL round bottom flask equipped with a stirbar. The resulting mixture was stirred vigorously and cooled to 0° C. under nitrogen. Sodium triacetoxyborohydride (0.553 g, 2.61 mmol) was added slowly. The resulting mixture was stirred vigorously at 0° C. under nitrogen for 30 min. The cold bath was removed and the resulting mixture stirred at room temperature under nitrogen for 2 h. The mixture was cooled to 0° C. and more sodium triacetoxyborohydride (0.250 g, 1.180 mmol) was added. The cold bath was removed and the resulting mixture stirred at room temperature under nitrogen for 1.5 h. More sodium triacetoxyborohydride (0.055 g, 0.260 mmol) was added. The resulting mixture was stirred vigorously at room temperature under nitrogen for 1 h and then stirred overnight at 0° C. The resulting mixture was diluted with methanol and the volatiles removed under reduced pressure. The residue was taken up in methanol, filtered and purified using reverse-phase preparatory HPLC (10-40% acetonitrile+0.1% TFA in water+0.1% TFA, over 30 min). Fractions containing the desired product were combined and the solvent removed under reduced pressure. The residue was dried under vacuum to give the desired product (0.890 g, 1.978 mmol, 67% yield) as a slightly yellow foam-solid. MS (ESI) m/z 451.3 [M+1]+.

Workup

  1. customAll volatiles were removed under reduced pressure
  2. customthe residue dried under high vacuum
  3. customto give a yellow semi-solid
  4. stirringThe resulting mixture was stirred vigorously
  5. temperatureheated at 80° C. under a reflux condenser under nitrogen for 2.5 h
  6. temperatureheating at 80° C.
  7. waitcontinued for another 2 h
  8. customThe resulting yellow solution was removed by pipette from the solid sodium sulfate into a dry 250 mL round bottom flask
  9. customequipped with a stirbar
  10. stirringThe resulting mixture was stirred vigorously
  11. temperaturecooled to 0° C. under nitrogen
  12. stirringThe resulting mixture was stirred vigorously at 0° C. under nitrogen for 30 min
  13. customThe cold bath was removed
  14. stirringthe resulting mixture stirred at room temperature under nitrogen for 2 h
  15. temperatureThe mixture was cooled to 0° C.
  16. customThe cold bath was removed
  17. stirringthe resulting mixture stirred at room temperature under nitrogen for 1.5 h
  18. stirringThe resulting mixture was stirred vigorously at room temperature under nitrogen for 1 h
  19. stirringstirred overnight at 0° C
  20. customthe volatiles removed under reduced pressure
  21. filtrationfiltered
  22. custompurified
  23. customreverse-phase preparatory HPLC (10-40% acetonitrile+0.1% TFA in water+0.1% TFA, over 30 min)
  24. additionFractions containing the desired product
  25. customthe solvent removed under reduced pressure
  26. customThe residue was dried under vacuum

Sources & evidence

ORD record
ord-eac2e8c73ebe4d888d9d1a14f372bd23
Source dataset
uspto-grants-2015_11
DOI
10.6084/m9.figshare.5104873.v1
Patent number
US09193692B2

Reaction notes

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