Sodium Chloride → 5'-Thymidylic acid
Reaction equation
C(O)C(N)(CO)CO.Cl.[Mg+2].[Cl-].[Cl-].[Na+].[Cl-].[OH:15][P:16](=[O:43])([O:26][CH2:27][C@H:28]1[O:42][C@@H:32]([N:33]2[CH:39]=[C:37]([CH3:38])[C:36](=[O:40])[NH:35][C:34]2=[O:41])[CH2:31][C@@H:29]1[OH:30])[O:17]P(=O)(OP(=O)(O)O)O.[As](C)(C)(=O)[O-].[Na+].[Cl-].[Cl-].[Ca+2].SC[C@H]([C@@H](CS)O)O>>[CH3:38][C:37]1[C:36](=[O:40])[NH:35][C:34](=[O:41])[N:33]([C@@H:32]2[O:42][C@H:28]([CH2:27][O:26][P:16]([OH:17])([OH:43])=[O:15])[C@@H:29]([OH:30])[CH2:31]2)[CH:39]=1Participants
Procedure
Thus, 400 μg of pCDVl [Okayama & Berg: Mol. Cell. Biol., 3, 280 (1983)] was added to 300 μl of a solution containing 10 mM Tris-HCl (pH 7.5), 6 mM MgCl2 and 10 mM NaCl and, after further addition of 500 units of KpnI, the plasmid was cleaved at its KpnI site by 6 hours of reaction at 37° C. After phenol-chloroform extraction, DNA was recovered by ethanol precipitation. About 200 μg of the KpnI-cleaved DNA was added to 200 μl of a solution prepared by adding dTTP in a concentration of 0.25 mM to a buffer (hereinafter, TdT buffer) containing 40 mM sodium cacodylate, 30 mM Tris-HCl (pH 6.8). 1 mM CaCl2 and 0.1 mM dithiothreitol (hereinafter, DTT). After further addition of 81 units of terminal deoxynucleotidyl transferase (hereinafter, TdT) (P-L Biochemicals), the mixture was incubated at 37° C. for 11 minutes, whereby an approximately 67-mer poly(dT) chain was added to the KpnI cleavage site 3' terminus of pCDVl. Ethanol precipitation from the solution following phenol-chloroform extraction gave about 100 μg of poly(dT) chain-added pCDV1 DNA. This DNA was added to 150 μl of 10 mM Tris-HCl (pH 7.5) containing 6 mM MgCl2 and 100 mM NaCl and, after further addition of 360 units of EcoRI, the mixture was incubated at 37° C. for 2 hours. After treatment of the reaction mixture by the LGT method, a DNA fragment, 3.1 kb in length, was recovered. Thus was obtained about 60 μg of poly(dT) chain-added pCDV1. This DNA was dissolved in 500 μl of 10 mM Tris-HCl (pH 8.0) containing 1 mM EDTA, the solution was incubated at 65° C. for 5 minutes and then cooled with ice, and 50 μl of 5M NaCl was added. The mixture was subjected to oligo(dA)-cellulose column (Collaborative Research) chromatography. Fragments sufficient in (dT) chain length were adsorbed on the column. They were eluted with 10 mM Tris-HCl (pH 8.0) containing 1 mM EDTA to give 27 μg of poly(dT) chain-added pCDV1 (hereinafter briefly referred to as "vector primer").
Workup
- customby 6 hours
- customof reaction at 37° C
- extractionAfter phenol-chloroform extraction, DNA
- customwas recovered by ethanol precipitation
- additionAbout 200 μg of the KpnI-cleaved DNA was added to 200 μl of a solution
- customprepared
- additionwhereby an approximately 67-mer poly(dT) chain was added to the KpnI cleavage site 3' terminus of pCDVl
- customEthanol precipitation from the solution
- extractionphenol-chloroform extraction
Sources & evidence
- ORD record
- ord-d921390a00bf4146b83e72a223b8123c
- Source dataset
- uspto-grants-1993_06
- Patent number
- US05218092
Reaction notes
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